RNA id: TU194696


Basic Information

Item Value
RNA id TU194696
length 264
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G154583
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10667998 ~ 10668261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGGTAAGGAGTGGTTGcgtgtttttataattattatcgcagaaactgaaaagaaaagaaaagaaaagaaagaatgaattacagaaaagaaaaagaatgacaGCACGGGTGAAAGACAAAGCAACACCACCACTACTGctgcccccacacacacagcacagcggCTGGCGCCCCACTCCACAGCCCACGCAGGGACACTCGCTCCGGCCGGCCCGGGGCTGCTGTCCTCCCCTCCTGTCGGAAGGACGTCCAATTACCCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194687 lncRNA upstream 91561 10575979 ~ 10576437 (+) True G154574
TU194598 lncRNA upstream 141946 10523967 ~ 10526052 (+) True G154505
TU194560 lncRNA upstream 178144 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA upstream 178144 10441067 ~ 10489854 (+) True G154473
TU194527 lncRNA upstream 338999 10328035 ~ 10328999 (+) True G154447
TU194697 lncRNA downstream 21882 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA downstream 21882 10690143 ~ 10693953 (+) True AMCG00005835
TU194890 lncRNA downstream 329388 10997649 ~ 10999389 (+) True G154722
TU194957 lncRNA downstream 506134 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 651703 11319964 ~ 11361770 (+) False G154798
AMCG00005803 mRNA upstream 34566 10626449 ~ 10633432 (+) True AMCG00005803
AMCG00005804 mRNA upstream 44989 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005857 mRNA upstream 144167 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005856 mRNA upstream 160706 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005858 mRNA upstream 165176 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005835 mRNA downstream 11676 10679937 ~ 10690305 (+) False AMCG00005835
AMCG00005837 mRNA downstream 28516 10696777 ~ 10697001 (+) True AMCG00005837
AMCG00005836 mRNA downstream 32749 10701010 ~ 10712559 (+) True AMCG00005836
AMCG00005834 mRNA downstream 53491 10721752 ~ 10736626 (+) True AMCG00005834
AMCG00005833 mRNA downstream 177275 10845536 ~ 10846858 (+) True AMCG00005833
TU194591 other upstream 151608 10512504 ~ 10516390 (+) True G154499
TU194578 other upstream 196367 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 199647 10462537 ~ 10468351 (+) False AMCG00005821
TU194450 other upstream 580306 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 591496 10065160 ~ 10076502 (+) False AMCG00005802
TU194711 other downstream 54071 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 245136 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 339283 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 414900 11083161 ~ 11086011 (+) True G154756
TU194985 other downstream 651703 11319964 ~ 11325074 (+) True G154798

Expression Profile