RNA id: TU194763


Basic Information

Item Value
RNA id TU194763
length 3743
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G154642
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10690148 ~ 10693965 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atatttattttttttgtatttttttttgtatatatttttttttgtatttttgtatttttcatctttttaattattcttcttTTTTAGGAGAAGGCTATGAaaatcattttcatgttttaatgagGTCCAGGCAACAGTGgttgaaatgaaacaaatacaaaataaaaataaaattatatatacacatatagaagcatatgtatatatataaaatgtgtgtggctaaaaatactgtaaatcaaTAACCATTCAGACCCTCTGATGGGGTTTAGCAGTAACACCGTCTCCCTCCCCCCGTCCACACAAACAGTACATGCAATTAAATGACACAATCTCTTAAAAACAGCAGTTTTCTTCTTTAAtcttaaatacagaataaagttgtcctttttatttctttatttagtgttcatttgttttaaaaactggaCCCAGAAATACAGAGGTCCGCCTAATGATTCACAACGTTGGCACCTGAAAGGGGTTGAGCCACAGGGAGGGGGTTGGCACACGTATTATAGTACATCATTTACATTTGGTATActtagaaaacaacaaccaaaaaatacatGACTTGAAATTTGTACATCACTACACAATTTTTTAATCACcttgtgtttgtatatgtatatgtgtgtgtaatatatatatatatatatatatatatatatataaacaaataaaaaatatatattaagagaTTCTAAAAACAATAGTGTTTAGGTCATGTATcggcattcatttaaaaaaaacaaaaaaaaaaacaggaagaaaataaattaaaataaaaataaaataaaaagtaagttTAAATTACTCTACATCCGCTGCACTGTCATGGATGCCCAGCACAGCATCGCACCACCCGGCCCAGTACCTGTGATGTACAGCTGTGATCGGATGACCGGCGGATGAGTGAACCTAACTCGTGCTCTCCTGCAGGTTGAGCACGGACAGGGGGGGCACCAAGgagccgggggggggggcactggtTCTGCGCTGACTCATCTAATTTATCTGTAATATTTTGCTTTCCGCCGAGGAAGATAACACTCAAAACTCACACCCCACCGATGCCTCCgagtttacaaataaatacaaatgtatccCCACTGTCCGCCAGTGCTATCACAGTGCCACATGCACAAACCCTGCGTACACAGGTGTGGGGTTATATCCATTACCTGCACCATCTGTAAGTGCGGTGCGGCTTTGTCTCAGAGCGCAGCAGCCGGAGAGGCTGGCACCACACCTCCCAGTCCGCTGCCACTCACGCCTCCTGCGCTCATCGCTGACCCCCCATGCCCCCAGCGCCTCAGAGAGAAGTCAGACCGCTCCTCACCGGCCAAGAGACGGGCCGACGGAGCTGCTGTCCGCAAACCAGCACAAATAAGATCCTGAAACCCaatgcacagacacagccaTACGACTCAAAGACTCCAAGGGACTCCTTAACGaacagcagcagcctttatcaTTACAAACGCTTCTCCTCAATTAACAAACACTTGGAGCAGCACCCTGGTCTGCACTGAAGGACTCCGGCCCACCAATCGGCACGTGGCGCCGCGGCAGCGCTGCCACGCAGGAGAGACAAGGTGACACGGCGGGGTCAGCGCCGTTTGGGTTCTCATTTTAAGATGGCCAGCAGTGTCAGCCATAGATGTTAGATTTAGGTGTTGGAGGAGTGgggaaaacaaaccataaaaataaaaatggaccCTTTTCCtaattttttgtttggttctgtAGGTGTGGACACAGTGGGGGCCGCAGACCCCCAATGCCATGGAGTGTTTCGGAGCGCGAGGACGAGTTGAAGGCAGCTGCCTTCTCAGGGTCACAGGCCAGTTATTAGCAGCTGTTGAGCGATTCTGCGCCTGCTGGCTCAACCCAcaccacaaaaaacatttaatttctccAGAATTTAGTCTGTCGAACCCGTGTTCTCGGTCCGTCGTGGATCAGAAACATCCTTGCAGCTTTGTTTTTGCAACAGGCGGCAGCTCCCAGGAACTCTAAATGATCTGGTGGCACTACAGTAACCCCCCCAACCCCGTCCAGCTGTGACAAATCACTATAATACTTAATATCCCCATACTGATACAGTAGATCCAACAGTGCGACAGTGCAGAGGGCCCCGGCCGCCCAGCGTCTCCAGACGGGAGGATACTGCGGCTTTTCAAATACTTATCAGGTATTGGCACTAATTCAAGAGGCTCAACAAGAAGAGggaaacaccaccaccaccaccaccctgttcctcctctccctccgaGAACAGCAAAAGATGAGACTGGCGCCAGCAGCGGCCCCTCAGAGCCCCTGGTGCCCCTCTACCTCTGACCCAGCCTGGGCCAAGTAGTGTGCGGGCAGGACAGGACAGTGACCGGCGGGTACAGAGACGACGGCATGCAGATAGTCGTTGTTTGGGGCTTGTAGTTTGGGTTTTTAGCGGTGGGGGTAGCTCTGGGGGACTCGGCTCAGAAGAacatgcgctctctctctatcgctctctctctgttcacTCACAGGGCGAGAGGTGGTGTTCATGTGTTCGCTGTATTGGTACTGCTCCCCGCTGTGCTGGAGCAGGGGCTCTGTGCTGCGCCGCCGGGGCCCCCCTGTACACATGTCCGTGCTGAACCCGCACTCGAGCCGCGCCCCGCTCTCCATTTTTGCGTCGTCTGATgcaaacccccccaccccatctccGGTCCTCACTCCCAGCCCTgcaaaaatgcacattaaaacTCTCTCGCACTACACTATCTATAGAAGCCTGTAATAAATGTTAAGAGTTCATTAGCCCTTGTGATGAGAATGCGTGAAACTGACCCGACCGTACTGCagaaaccccccccaccccgcagCACGGCTCCGCAGCTTCTAGTGTCACTAAGCCAGGACAAGCCAAAGGACCACAACGAGAggtacaacaaaataaagaaaagcacgCACCAGACAATTTTCAACCACTGATCGCTCCTTAATATAGATTGTAGAATTTCCTATTTTTGCATAAAGCACTGCTCCTAAAAATTTTTAtaaagaattttttttttccatcattgAAGAAACCGAACCAAAGAAGAATCAAGTGATGCATAAAGTGTCTTGACGGCCACTTCAGTCGAACACGGCAGCAACCGAGTGAACCGGAGTGACAGCTCATTGCGTGCCTAAAACAATGCGCCTGCGTGCGTTTATGAATTTCTTACAGCAGAACAGACCTACTGTCCCCCCAGGGAGAGAGATGAGCGCAAAACTCATCAGGAAGGAAACAAAACgataaaaagggaagaaaaaaacaaaacgacatcTATAAAATCTGGTCcataaataagataaataaaactatttctttatttagtttctttttaaaatcactgTTAAATCGTCCTAAACCATGCCACccgatggaaaaaaaataaaaataaaaatgaagaaacagacGATCGACACACACAGCCCGTCCTCCTCACACACTAGATTACAGATTCCCCAAGAACTTTTTAACAAGTTACTCGGCACAAAAACAGAAGATGCACACTATTATTTATATCATGACCTCGCTCATTACCTCTATAACTGTAATCTGCAAACATAAGTACAGCAAGTAAATTGTATGAAACTTCAATAATGGATAGCCTGTGGCAGCCTCAGTGCTATGGTAATGCATGAGCAACCCGAAGGGGCAGGACAGCACATCAAAATGGAGAAAAAGATGGAGGCGAAgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194688 lncRNA downstream 113646 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 144545 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 545217 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 551223 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 598532 10089554 ~ 10091616 (-) True G154391
TU194798 lncRNA upstream 44579 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 108599 10802564 ~ 10818716 (-) True G154675
TU194827 lncRNA upstream 155653 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 216551 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 285593 10979558 ~ 10981714 (-) False G154715
AMCG00005805 mRNA downstream 24893 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005863 mRNA downstream 132393 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 138793 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005859 mRNA downstream 150102 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005861 mRNA downstream 170530 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005839 mRNA upstream 45695 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005838 mRNA upstream 74826 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005828 mRNA upstream 94589 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005830 mRNA upstream 124905 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 136025 10829990 ~ 10837970 (-) True AMCG00005829
TU194621 other downstream 337366 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 338429 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1255208 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1597575 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2565463 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 149876 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 212330 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 216551 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 626772 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 642809 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile