RNA id: TU194807


Basic Information

Item Value
RNA id TU194807
length 1322
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G154675
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10802564 ~ 10818716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGCACTCCCAGTCTCTGTCCCAGTGAGGGGGGGGCGGAGCTGtggagagagggtgggggggtgcagttTTATGGTGCACAAGCTCCCCCCACTCCACTCTCCTGCAATATCATAATCCAGCCTGGTGATTGGGGGGCCAGTCCAGAGAGTCCAGGCCCGGCTCAGGCCCGGCTCAGAGAGGAGCCGCACACTCTGGGTCAAGAGGGTCTGCAAGTTCTGCTGTCATTGTGGTAACAGTCTGAACAGTCAGATATGAGgcagttattattatgattattataattatgttttgttttggtataaTTAAGATGCATTAATTGCTCCAGCTGGAAGGGAAGTCGGAAGACTCTGTagtggactggactgtactgcTCTGTAGTGGACTGTATTGTACCATGCTTGTACTAGACTCTACTGAgctgtagtgtactgtactgtgctgtactggatCAGCACTGGGCAGTCTGGTGTGTCCCCTCGCTGCTCCTGGATCCGGCCCGTGTGCCTGTGGAAACAGCCGGTCCAGTTCAGGCACGCCTCTCTCGCAGCACATGGGGAGGCGCCACTGGGGGACAGTGCTGGTTATgtcagtgctctgtgctgtatttaaaaTCCAGCCACAGCAGTGACCCCTGAAGGAACTTTGACCTTTAACACCCACACCTGTCACggaggcagagagggagcaGCACACTGGACGCTCCCCACCGTCCAATTGGAGACAGAACACACAACGGCAAAGCAGAGTCCAGTCTGAGATGAGCGCTGTCATTCGGACCCAAGCCCGGCCAAGCGGACGTCTCTCTATCTGTGCTATTTTTGGGCCCATACCCCCCAGGGCCATAGAACGCTTTTTAATTTCCAACCCTCTCCTGCAAAGAacagaagtgttttattttttttattgttaaaatatattattattttctgggaGGATCATAGACTGTCTGTTTAGCAGAGggctctggtcctggagagccacagtccagtccagcccacTGTAGACCAGTCTGGTCCAGCCCAGCCTGTTCTGGTTCCAGCTGAGCTACAGCAGATGGAtgccctttccctccctcctttccCTATCTGTCGTTGTGTAGGGCAGTCCAGGACAGCCTGTTTCAGGTGTGGATTCTGGTGTTATCCACAGTGCCCCCCCTTTGCTCGCCTGCTATTTATTTACTAAGATTTAAGAATGACAAGgatgcaaatgtttatttttgtttacagttatGGGAGGTAGGGGTGTGTACACATTTTTAGCGTTTttattgtatggtttatttttgttttgcttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194798 lncRNA downstream 59716 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 108599 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 226062 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 256961 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 657633 10144483 ~ 10144931 (-) True G154400
TU194827 lncRNA upstream 30902 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 91800 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 160842 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 160955 10979671 ~ 10982521 (-) True G154715
TU194873 lncRNA upstream 163249 10981965 ~ 10983480 (-) False G154715
AMCG00005838 mRNA downstream 25418 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005839 mRNA downstream 50450 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005805 mRNA downstream 137309 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005863 mRNA downstream 244809 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 251209 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005830 mRNA upstream 154 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 11274 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005831 mRNA upstream 30799 10849515 ~ 10865796 (-) True AMCG00005831
AMCG00005827 mRNA upstream 48747 10867463 ~ 10869932 (-) True AMCG00005827
AMCG00005832 mRNA upstream 51886 10870602 ~ 10879010 (-) True AMCG00005832
TU194621 other downstream 449782 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 450845 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1367624 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1709991 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2677879 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 25125 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 87579 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 91800 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 502021 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 518058 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile