RNA id: TU194815


Basic Information

Item Value
RNA id TU194815
length 2132
RNA type TUCP
GC content 0.57
exon number 2
gene id G154677
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10843841 ~ 10912745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAATCGcacatccatttttattttactttattatcattatcttttttcagttttttttattttatttttttccataactTTAAAGActccattaattattttctgtagttAAGTCGATGGTCGCCGAATCCGGTCTGCGGTGTTTGCGTGCGGGGAGGTGCAGTGTGGTGCTCTGTACAGTCCCGACCCCCGTTCCGGGTTTAGGGAGGAGAGGAATGAGAAGGGTGCTTGGTTCCATTTTGGTAGTCCCTCCTGATTTCTCTACAGTTTGTCCAGGTAGTTGTCCAGGGCAGGGATACCCTCCTTCAGCCCCTTGCGCTTGCGGGTGTCGGTCACCACCTGGGCCGGCTTGGTGCTGGGGTCGCTGGGGTCTCCGGGCAGGATCTGCCAGTGGTCGAACACGCACTGCGGGAAGGCCTGGCCACCGGTGTTGGAGCGCAGGTCAGCAGTGAAGCCTGGAGGGacaggggagaggagaggacagtCAGACAGGAGGTCCAGAGGGAATGTATGCAAGTGTACAGTATTTTGCCAGTGTATCGTAGAGTTTCGGTGTGGGTGCAGGCGTCTCACTCACCGAAGGACTCGTTGACGGGCAGGAAGGCCTTGACGATGAACATGGGTGTGCCAGTCACCTGGGACTCCTCGAACACGTGCCCTCGCTTCCTGTTCAGTACACCATAGATGCCACCCACCACCTGCTCCGGGCACTGCGATTGGACAAGACAGGAGTCAGTCAAAACTGTAGATTCCCCAGTTGTGGGGTTCAGAAGGAAGGCTCAAGATTGGCAGAGCGGTGCGGTCAGTGAACGGGCAGGGCAGACACTCACCTGGATCTCCACCAGGTAGACGGGCTCCATGAGGCGGGGCTCGGCAGTGAGCTGGCAGGCGTACAGCACGCGGCGTGCCGTGGGGATGATCTGGCCACCACCACGGTGGATGGCGTCCGTGTGCAGCGTCACATCGTGGATGTCAAAGCGAATGGCACGCATGTTCTCCTCGCACAGGGCACCCTGGGTAATCAGAGCAACATGCATCACACACAGGCCGAGTCCCAAGTGTAAATACTTCTATACCAGCCTACTCCTCTCCCTGCCGCTCTACTCACCTCCTTGGTCGCCCACTGGAAGCCAGCCACCACGCTATCCTTGATCTCGTTCAGGTACTGCACTCCCTTGGTCACGTCCACCAGCATGTTGGGCCCGGTACCATCAGGGCCAAAGCACCAGATCTTACGGGCCTCGGTCACGTCCCACTCGTACTTGTCAGCCAGGTAGCGAGCACGGGCCTTGAGCTCCTGTCGGGAGGAGACGTCGCCCTTCTCGATGTCCTCGGCCAGGCCGTCGGGGAAGGGGCGGGCGCGCATGTACAGGCGGTTGTGCTTGTTGGGGGACTTGGACAGGCACATCTGGTTGGACTCCTCACTCACCGTCTCCCTGTAGGACACCACCGGGTCAGATTCTTCAGTGGGATGCAGGCGTGGTCCTCCTCCAGATCCTTCAGGCAGATCTCCAGATGCAGCTCTCCAGCACCGGCAATGATGTGCTCACCAGACTCCTCAATGATGCACTGCACCATGGGGTCAGACTTAGCCAGACGCTTCAGACCCTCCACCAGCTTGGGCAGATCGGCGGGGTTCTTGGCTTCCACCGCCACACGTACCACGGGGCTCACACTGAACTTCATGACACGCATGTTGTGCGCCTGCTCGTAGGTGGTGATGGTGCCGGTCTTCACCAGGTATTGGTCCACTCCCACCAGCCCCACGATGTTTCCGCAGGGCACATCCTCGATGGGCTCCACATAGCGCCCCATCATCAGGATGGTCCTGAGGGGGAGAGGGGTTTAAGTTAAACAGAAGACAGTAGTggaaagggaggaggaggaagaggaagacgaGAGTGCATGGGCTGGGACTGACCTCTGAATGGGTTTGAGGTAGAGGTCCTCCTTCTTGCCGGGGGTGTAGTTTGGTCCCATGATGCGCACCTTGAGGCCGGTGGACACACAGCCAGAGAAGACGCGTCCGAAGGCATAGAAGCGGCCCTTATCCGTGGTTGGCACCATCTTGGAGATGTACATCATCAAGGGGGCCTTGGGGTCACAGTTCTTAATACCTGAGGGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194827 lncRNA downstream 54107 10849618 ~ 10856409 (-) False AMCG00005831
TU194807 lncRNA downstream 91800 10802564 ~ 10818716 (-) True G154675
TU194798 lncRNA downstream 167668 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 216551 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 334014 10575970 ~ 10576502 (-) True G154575
TU194875 lncRNA upstream 66813 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 66926 10979671 ~ 10982521 (-) True G154715
TU194873 lncRNA upstream 69220 10981965 ~ 10983480 (-) False G154715
TU194891 lncRNA upstream 85032 10997777 ~ 10999382 (-) True G154723
TU194918 lncRNA upstream 88929 11001674 ~ 11078201 (-) True G154745
AMCG00005871 mRNA downstream 8233 10897007 ~ 10902283 (-) True AMCG00005871
AMCG00005872 mRNA downstream 18214 10890557 ~ 10892302 (-) True AMCG00005872
AMCG00005832 mRNA downstream 31506 10870602 ~ 10879010 (-) True AMCG00005832
AMCG00005827 mRNA downstream 40584 10867463 ~ 10869932 (-) True AMCG00005827
AMCG00005831 mRNA downstream 44720 10849515 ~ 10865796 (-) True AMCG00005831
AMCG00005870 mRNA upstream 590 10913335 ~ 10917815 (-) True AMCG00005870
AMCG00005844 mRNA upstream 53683 10966428 ~ 10974812 (-) True AMCG00005844
AMCG00005847 mRNA upstream 62661 10975406 ~ 10976142 (-) True AMCG00005847
AMCG00005846 mRNA upstream 63497 10976242 ~ 10982438 (-) True AMCG00005846
AMCG00005841 mRNA upstream 69840 10982585 ~ 10986224 (-) True AMCG00005841
TU194821 other downstream 84 10906295 ~ 10910432 (-) False G154677
TU194621 other downstream 557734 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 558797 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1475576 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1817943 9090422 ~ 9092573 (-) True G154142
TU195013 other upstream 407992 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 424029 11336774 ~ 11339114 (-) False AMCG00005877
TU195020 other upstream 436500 11349245 ~ 11354633 (-) False AMCG00005879
TU195574 other upstream 1758907 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1931033 12843778 ~ 12854803 (-) False AMCG00006063

Expression Profile