RNA id: TU194822


Basic Information

Item Value
RNA id TU194822
length 872
RNA type TUCP
GC content 0.55
exon number 3
gene id G154677
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10843841 ~ 10912745 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAAATCGcacatccatttttattttactttattatcattatcttttttcagttttttttattttatttttttccataactTTAAAGActccattaattattttctgtagttAAGTCGATGGTCGCCGAATCCGGTCTGCGGTGTTTGCGTGCGGGGAGGTGCAGTGTGGTGCTCTGTACAGTCCCGACCCCCGTTCCGGGTTTAGGGAGGAGAGGAATGAGAAGGGTGCTTGGTTCCATTTTGGTAGTCCCTCCTGATTTCTCTACAGTTTGTCCAGGTAGTTGTCCAGGGCAGGGATACCCTCCTTCAGCCCCTTGCGCTTGCGGGTGTCGGTCACCACCTGGGCCGGCTTGGTGCTGGGGTCGCTGGGGTCTCCGGGCAGGATCTGCCAGTGGTCGAACACGCACTGCGGGAAGGCCTGGCCACCGGTGTTGGAGCGCAGGTCAGCAGTGAAGCCTGGAGGGacaggggagaggagaggacagtCAGACAGGAGGTCCAGAGGGAATGTATGCAAGTGTACAGTATTTTGCCAGTGTATCGTAGAGTTTCGGTGTGGGTGCAGGCGTCTCACTCACCGAAGGACTCGTTGACGGGCAGGAAGGCCTTGACGATGAACATGGGTGTGCCAGTCACCTGGGACTCCTCGAACACGTGCCCTCGCTTCCTGTTCAGTACACCATAGATGCCACCCACCACCTGCTCCGGGCACTGCGCTTGCGGGTGTCGGTGAAGCGGGTCTCTCCGGCGCGGGACGAGGCAATGATGCCAGCCTTGGACACCAACGAGTCGGTCAGCGTGGATTTGCCGTGGTCGACGTGCGCAATCACAGACATGTTACGGATGTTGGACTTTTTGCCGGGTCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194807 lncRNA downstream 25125 10802564 ~ 10818716 (-) True G154675
TU194798 lncRNA downstream 100993 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 149876 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 267339 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 298238 10543534 ~ 10545603 (-) True AMCG00005862
TU194875 lncRNA upstream 66813 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 66926 10979671 ~ 10982521 (-) True G154715
TU194873 lncRNA upstream 69220 10981965 ~ 10983480 (-) False G154715
TU194891 lncRNA upstream 85032 10997777 ~ 10999382 (-) True G154723
TU194918 lncRNA upstream 88929 11001674 ~ 11078201 (-) True G154745
AMCG00005829 mRNA downstream 5871 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005830 mRNA downstream 15770 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005828 mRNA downstream 37558 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005838 mRNA downstream 66695 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005839 mRNA downstream 91727 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005870 mRNA upstream 590 10913335 ~ 10917815 (-) True AMCG00005870
AMCG00005844 mRNA upstream 53683 10966428 ~ 10974812 (-) True AMCG00005844
AMCG00005847 mRNA upstream 62661 10975406 ~ 10976142 (-) True AMCG00005847
AMCG00005846 mRNA upstream 63497 10976242 ~ 10982438 (-) True AMCG00005846
AMCG00005841 mRNA upstream 69840 10982585 ~ 10986224 (-) True AMCG00005841
TU194621 other downstream 491059 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 492122 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1408901 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1751268 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2719156 8091748 ~ 8124685 (-) True G153806
TU195013 other upstream 407992 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 424029 11336774 ~ 11339114 (-) False AMCG00005877
TU195020 other upstream 436500 11349245 ~ 11354633 (-) False AMCG00005879
TU195574 other upstream 1758907 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1931033 12843778 ~ 12854803 (-) False AMCG00006063

Expression Profile