RNA id: TU194931


Basic Information

Item Value
RNA id TU194931
length 2814
RNA type TUCP
GC content 0.45
exon number 2
gene id G154756
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11083161 ~ 11086011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCATgtttgtagtatttatttagatttttttttttttttaaacacttaaattaTACATTCAGTCCACATGGTATACTCAGGCAGAAaaggacaaaaatatatatataaaaaaagcctTTGAATTGGATCAATGCTACCTACACTGCTGAAGTGGGGATTTGGACACACGTACCACAGACATGATTCTGCTGGAGTCTGATTTACAATCAGTGGTTGTGTGGCAGAagaaaattagaaatgtaaacaaaaaaaaaaacatactaaaagaaaattagaaaaagaagaaaacctaATCCAGCATGATGATGCGGGAACGCACCTCCGTCCATCCCTTTACAGAACTGTGCCTCTCCCACTCGTGTGCAAGAGCTCATCCAGTGTGTATacaggcgtgtgtgtgtatttaacagGACATCGCACGGAGCAGTGTAcgacacacaaaacacagcagccaACTCCCTTCGACAAGATCAGCGGATCACGGCTAGAGAGAACGTGTTTTCAAGCCTCTGAAGTCTgcatgtttgcatgtgtgtgtgtgtatatataatcttataTACACAAACTTATCAGAGGGACAGAATCGGTCTTGTGTATGACAATGCGAGTGAGTCAATGAAAAACCCCTCTCAGGCTCCTTAAATGTCTTAAAGAGTCTAGGAACAAAACTGGGAGTGGGATCTGTCCTGCATCCTGAGCGCACTGTCCCAGCTGTGAGTCTCAGCGGACTCAGCCCAGCGCGGGGGAGTCGGCACCACGGGAAGTGAGGGGAACGCAAGTACTGTGTGTAATACAACTGCTTCTGCAGCAGCTTAAGTATTATTTAGGCATGGAGTTCAGGGTTCGTTTTGCTGCCTGGCCACGGCAACTGGTTTGTCTCTCTGtacatcaatttaaaaacaaaacaaaaaacccaaaccGACACAAAAGACAagcaccaccccaccccccacacacacacacacacacaatatatcacaatattcttaaaaaactaaaatatcatCTATGCTGCCCCCAGGGAATATAGACcccaaccaaaacaaacaaaccagctAGCCAACCAAGACAAAAAAAGATCAaggtaattattataatttctgtcCTTGAACAGATCGCCCGGCGCAGCTCTCGCAGAGACGACATTTCATACGGGAATCATCTCCACCCATGACTCATTTCCGAACAACAcaagagagaagaaacaaaataaacaaaacaaaaaaaaacgaatcaAGGTACATATATACACCACGTTACTGATCTGTGAAAGCATGGCACACCTCCACTATGTGCCAAGCACAGTGGGGTTAATCTGTACAGCACTGTCTGAATACTGACGATGCCAGGATTAGCGTTTGGATACAACTGTAACTGCCCCCTACTCTCCTGCAGTGCCTCTCCCACACAATCCTGTTTCTGCTACTGGCTTCACCAAGAGCCTGCTTCGCACGGGTGGTGCCTCCTACAGGTGCCATCCGTGTTTGGGAATTCAAGGTCTTTTCGACGGCTAGCAGCTGTTTGCACACAGCCAGCCAGTGTGTCAGCTGGGGAAAAGGGGCTGGAGGACCCAGGCCGCCgtgattttttgtttctccGCATACAAGTCTCCGTTGAGGACGAGTTCTCCACCCTACAGAGCCATGTCCTCTTGACGGAGTGTTTTCCCAACAGCCTTGGGAAAACTCGGGGTCAGATCGTCAACAAGTCCACTACGACCGCAAATCTGAAGTCCACCAGGGTAGTGGACACGTTAGTTGACCGCGTTTAAAGTTTCTGTGAAAAAGAAGCTGTAAGAccttcaataataaaaattaatttaaaaaagaaattgaaattaataagTACATGCAGGTATAACAGAGCAGTCTGCggaagtttatatatattaaacaaaaaaagtaatataaaaaaagacattctgCTTTTGCTGGCGATCTGAGCTGCCCAACCCGACACCGAAGAAACTCGAGACTCACAGCATCGTTCTGAGTTACTGGGAAAAAacctcaaaataaattaaagacgGGCGAGATAATGATCACAGACCCGTCCCTGTCCCCCTTCTCTTGCGCTTAATTCGAGAGGAGAGGCGGTGAGGCCTGCCAGGGGGCTGGGAAGGGCTGGGGGCGGCACATAGAATAGGAGCTCCAGTAGAGGGCAGAAGTGTGATAATTAAGAGGAAATAATTGTAACAAATGTCCAACATTAAAgccagtttttatttgtacacaTGTAGGTTGATCTAGACGTCCCTactttaaatatagattttctCTATAATATGTTGTACTCGTCTCCCCTCTTAACCCCTCATAACTctcattgtgtatttaaatggacaGAACAGCGTTCGACATTTGACTTGGCTGGTTAATACTCTCTAGCTGGGCAGTAACACACAGCGCTCACTGACTTCTgctgggactgggactgggactggggCCTGAGCCAGGACTGGATTAGGGCCGGAACCagattggggtgggggggtgataGGACACAGGtggatggaaaagaaaaagaacaataatgaaaaagaaaaacctgtctaagtggttgtgtgtgtgagagagagacggagggcagaggaaaacagtgtgtgtgagagagagatttgggggggggttgtgtgcgaTGTGTGAGAGATCCGGGTGCATACAGGCAGACagacatagacagacagacagacagacgggctGCAGCTCAGACAGCTGTGCGGGTGGGAGTGCTGGGCTGGTTCAGGTTCATGGTTTTGCACAACCAGCCTGCAAAGTCCACTTCTTCCACCTCTGAGCGCTTGATGAATGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194890 lncRNA upstream 83772 10997649 ~ 10999389 (+) True G154722
TU194697 lncRNA upstream 368454 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 389208 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 414900 10667998 ~ 10668261 (+) True G154583
TU194687 lncRNA upstream 506724 10575979 ~ 10576437 (+) True G154574
TU194957 lncRNA downstream 88384 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 233953 11319964 ~ 11361770 (+) False G154798
TU195006 lncRNA downstream 275994 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 284413 11370424 ~ 11370912 (+) True G154816
TU195024 lncRNA downstream 292769 11378780 ~ 11379289 (+) True G154831
AMCG00005840 mRNA upstream 73300 11006798 ~ 11009861 (+) False AMCG00005840
AMCG00005869 mRNA upstream 120474 10929794 ~ 10962687 (+) True AMCG00005869
AMCG00005868 mRNA upstream 159614 10919948 ~ 10923547 (+) True AMCG00005868
AMCG00005867 mRNA upstream 170489 10906357 ~ 10912672 (+) True AMCG00005867
AMCG00005826 mRNA upstream 196914 10882619 ~ 10886247 (+) True AMCG00005826
AMCG00005813 mRNA downstream 6820 11092831 ~ 11097368 (+) True AMCG00005813
AMCG00005812 mRNA downstream 12398 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005815 mRNA downstream 53787 11139798 ~ 11140832 (+) True AMCG00005815
AMCG00005816 mRNA downstream 85003 11171014 ~ 11172074 (+) True AMCG00005816
AMCG00005854 mRNA downstream 119376 11205387 ~ 11206589 (+) True AMCG00005854
TU194894 other upstream 72807 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 167432 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 352952 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 566771 10512504 ~ 10516390 (+) True G154499
TU194578 other upstream 611530 10470543 ~ 10471631 (+) True G154486
TU194985 other downstream 233953 11319964 ~ 11325074 (+) True G154798
TU195111 other downstream 516416 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 817375 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1605805 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1606749 12692760 ~ 12696319 (+) False AMCG00005987

Expression Profile