RNA id: TU194964



Basic Information


Item Value
RNA id TU194964
length 1146
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G154782
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11207031 ~ 11208176 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTACAACTagaataaaactttatttaatttgccaaAAACATATGTAAAGAGCTTAAagctttgttaaaaataaacgaGCTGAAAACGAGAAAGGAAACAAGCTGGAGTTGAGCCCTGATGTTGCAGTTTCAGCCCAGTTGTGTCTGAGTGAGTTCAGCGGGGCGCAGTGCGGTGGCACGGCAGGGCGCAGGCATTGCCCACTGCATGTGCCCGGGTCCGCGACGCGCTGCGGCTGCGCAGGGGAGCTGTGCCTCTGTCACAATTAATGGTTTCAAACCGCGTCAACACGTGACTGAAAttgtcaaatgtcaaatgtgtGCTTGAATAAGAGACACACCACTATCCAAGATCGTGTCGATCATATAAACAACtgtgaaaatgtcacatttaaatCATGGCAGATGGCACGtcgtgtcataacttcctggaaaAATCTGTCTTCCTAGACCAGATCTGTCTTCCCCACTGCAGCTGTTGTCCATTAGACATATTTCCGTCACTTGATCGTGCCGCTCGACTAACATACGTGTAACATGAATAAATCAACGTGTACCTGGGTCGTTTATCCTTGTGTGGCTTCCTTTTGTTTATCTGCTGAAGTGAATGCATTTCTACTCATTTCAGTTTGGATGAAATGTAACAAGGAATAATGTCtacaagcaataataattatggtCATGATTGGGATAACCTTATTATTGCTAAACACTAAACAAACTGCTTACTGaagattgtactggaataagaaagttacTGTATACCTGGCGaacatacacacaataacacacatcaGTAAATTCATATACACCAGCATAAGTGAGCGGCACGATCAAGTGATGGAAATATTGCCCTGTAATTTGATCATAGGTGTTGTGGAGAGGACAGTAGTTTGTatgctatccaggaagttaagACACAATGCAGTTTGACATGCACCACTACTGTGTGTTAAAATTTGACCTTTTTAACAGTTGCTTACTGGAGTCACTCGAACTGGAAGAGTGTTTTGTATCTTAATCATCCAACATAACAACACATACAGATGCGTAAAACTGTGAATTCCACTTAAGTATCAGCCTTGCAGTCATTAGGTTTTGGTTTTTGTTGGTGTCTGTCAACAAGCGTGACTTGGCTTGGGCCTCCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194918 lncRNA downstream 128830 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 207649 10997777 ~ 10999382 (-) True G154723
TU194873 lncRNA downstream 223551 10981965 ~ 10983480 (-) False G154715
TU194874 lncRNA downstream 224510 10979671 ~ 10982521 (-) True G154715
TU194875 lncRNA downstream 225317 10979558 ~ 10981714 (-) False G154715
TU194973 lncRNA upstream 75952 11284128 ~ 11284398 (-) True G154791
TU195009 lncRNA upstream 101522 11309698 ~ 11319984 (-) True G154817
TU195025 lncRNA upstream 166330 11374506 ~ 11376205 (-) False AMCG00005875
TU195046 lncRNA upstream 207641 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 361097 11569273 ~ 11613611 (-) False G154906
AMCG00005852 mRNA downstream 16726 11180934 ~ 11190305 (-) True AMCG00005852
AMCG00005814 mRNA downstream 113489 11082498 ~ 11093542 (-) True AMCG00005814
AMCG00005845 mRNA downstream 129417 11064028 ~ 11077614 (-) True AMCG00005845
AMCG00005843 mRNA downstream 175947 11013677 ~ 11031084 (-) True AMCG00005843
AMCG00005842 mRNA downstream 212710 10988152 ~ 10994321 (-) True AMCG00005842
AMCG00005855 mRNA upstream 54898 11263074 ~ 11266410 (-) True AMCG00005855
AMCG00005878 mRNA upstream 91436 11299612 ~ 11306670 (-) True AMCG00005878
AMCG00005876 mRNA upstream 112084 11320260 ~ 11325068 (-) True AMCG00005876
AMCG00005882 mRNA upstream 123596 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005877 mRNA upstream 128419 11336595 ~ 11339135 (-) True AMCG00005877
TU194822 other downstream 294286 10843841 ~ 10912745 (-) False G154677
TU194815 other downstream 294286 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 296599 10906295 ~ 10910432 (-) False G154677
TU194621 other downstream 854249 10315380 ~ 10352782 (-) False AMCG00005850
TU195013 other upstream 112561 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 128598 11336774 ~ 11339114 (-) False AMCG00005877
TU195020 other upstream 141069 11349245 ~ 11354633 (-) False AMCG00005879
TU195574 other upstream 1463476 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1635602 12843778 ~ 12854803 (-) False AMCG00006063

Expression Profile