RNA id: TU195045


Basic Information

Item Value
RNA id TU195045
length 265
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G154847
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11416065 ~ 11416329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCACTGGAGCATGAGCAGAGTCCCAGGCTGCTGCAGGTTGTCCCCAGGGAGGAGAGACAGTGTCCACCTGCCAGTGAGCTGCCCAGCCTCAGAGCGTCCGGCTGCAGTAGCACATCATTCCCAGAGAGCAATACGAGGAACGcacaaggcaaaaaaaaaaaaaatacagcactcTTCAGAGCTCTATATCCACCTCTCTGGGACTTGTCAACTATTCAGACCGGTGTTAAAGTCTTGGGAGTTTGCGTGTCCTTTCACTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195034 lncRNA upstream 6633 11406360 ~ 11409432 (+) False AMCG00005907
TU195024 lncRNA upstream 36776 11378780 ~ 11379289 (+) True G154831
TU195007 lncRNA upstream 45153 11370424 ~ 11370912 (+) True G154816
TU195006 lncRNA upstream 53832 11362005 ~ 11362233 (+) True G154815
TU194983 lncRNA upstream 54295 11319964 ~ 11361770 (+) False G154798
TU195063 lncRNA downstream 33151 11449480 ~ 11465625 (+) True G154863
TU195080 lncRNA downstream 70163 11486492 ~ 11488514 (+) True G154879
TU195120 lncRNA downstream 197341 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 215762 11632091 ~ 11638019 (+) True G154915
TU195134 lncRNA downstream 221995 11638324 ~ 11638774 (+) True G154916
AMCG00005907 mRNA upstream 6393 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005874 mRNA upstream 72461 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005873 mRNA upstream 84944 11324831 ~ 11331121 (+) True AMCG00005873
AMCG00005853 mRNA upstream 172267 11242839 ~ 11243798 (+) True AMCG00005853
AMCG00005854 mRNA upstream 209476 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005906 mRNA downstream 41169 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005908 mRNA downstream 61366 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005865 mRNA downstream 78812 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005866 mRNA downstream 142120 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005886 mRNA downstream 185573 11601902 ~ 11610151 (+) True AMCG00005886
TU194985 other upstream 90991 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 330054 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 405711 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 500336 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 685856 10722332 ~ 10730209 (+) False AMCG00005834
TU195111 other downstream 186098 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 487057 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1275487 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1276431 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1281019 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile