RNA id: TU195080


Basic Information

Item Value
RNA id TU195080
length 1987
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G154879
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11486492 ~ 11488514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGGGACAAAAACAGGCACCATTCGCCTGCATTCTCCTCGTCACATCATTTTATTTGGGGATTTGGATTAAAGCGGTTTTCCAAAATGGATGCCTGGTGGGGGGGCAATTAAAGAGGCAGATGAGCTTGCACAAGAACACTTCCTTtaggttcacacacacacacacacacacacacacacacacacacacacacaaacacacaaacacacagcatgaAATCTGCAAAGCAAACCGAACAGACAACAAGATATGCGGGACCTGGGAGTTTCGAGCCACGCAGTCAGTCAGCAGCCGGACAGTCACACAGAGAGGGCACTAAGCTGGGCCTGGGGAGAGGGGAGGTGGGAAGGAAGGAAGTCACGAATGCATCCGAAAGCAGCGGTTGCGTGATGAGCTTCGCGGTGGAGAGGGAAGGAACAGGTCCAGCGGAGAGGAAGGGAGGACTGGTGATTTCCTCATGACACGAGCGCATACGTTTCCGTGCAAAGCAGGTCTGAGGCAGAGAAGAAAGTTAACCATCAGTACTCAACTGGAATGaggacaaaataaatctgtatttatttatttatttatttatttatttattgcttggctatagctgcattttttttaaaaattccCACCTCCCAATCCATCCTTGTGCTGCCACTACTCTGAGCTTTAGTTTGTTGACTCTGCTTTATCGAGAGAAAACTTTTCAAGGTGAGGGCTCAAGCTTTTTGAGacatgtgcgtgcgtgtgtaaTTTCTATCCTTTGGTGGGAAGTGTGCACTAGCCCCAGTCAGGTTCACACCTTTAGAAACACCAGGAATGAAACTCGCAAGCATGTCTTTCCCCTTCGACCTCTTTAATCGTGCAGATACCCGAGTGACTCTCAGTTTTCCATCATCCTTTTCTGATAAGTGGccgaaggaaagaaagaaaagcaaagagaCGGAACATTAAGAGGGCTACCTCAGTCTCGTTCTCTCTGGGACCCATTCGTCAGACGTGTTCTGCTGAAATGACTGAAATGACAGCCTCCAGTTCCGGTCTCAGTCTGGATGTTACTCGCCCCTGCAGTGGGGCAGAGCCCAGCGAGTCACAGGGTCCTCGGCACTGTGGCCCCATGCGCTCAAGCACGCACCTGCTTATTAAATTGATTAGTATAAACACaaatcagttaaaataaatagttcacCTATCAATGACTTAGCTGCGCCACTAGctgcagaaaacattttgtgctgtgtgtgtgtttaagggACAGGGGATTGGCATGGGGGGTGGAGCACGTGCGCTTGGGTGAcgacaaatcaaaaCAGGAAAtcagagtatttttttttctggttggtttctctatttatgtatttatttatttattatttgcaataCAGGGCAGCACTGGAAATAAGCTAAGCTGAAATAATTACCTTTTCCTGACTGGGCAGCGCTATTGTATTCTACAATCAGATGTGAACAAtaattgtttgaaaataaagcaaatgctATTTCTGgcataataatacttttttttaaacacatgcaAACCTAGCGATCGTAACCCGACCTTGCTTTTGGGACCAGGTTCAGCCATCGACGAGACGCTTCCACATCCACTCTGGTGGCGTTTCTGTGGCTGGCCTGTGACCCGTTTCAGTTCTGTTCTTTGGTAGTGTCTGGCTACAGCGCATGCGTCACTGTTCTCCGTAAACTCGCAAAATCTGCAACGTCTTGCAATGTTATTGCTCTCTGTTTTCaccatgtaataataatgagtacTTATTCAAATAAGATAATatacactgaaaacacaaagatgattttttttactactgaacaaaaaaaaaaagaagtttaaagaaaaggcaaacaagTGAAATGCGAACCATTGGTGTCACCGATAGTCATTACTGTcgaaataagaaaaacaaagcacgTTGTACCcgtgtttcctttttaataataattacaaacattcaaataaagtgttttaatgAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195063 lncRNA upstream 20867 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 70163 11416065 ~ 11416329 (+) True G154847
TU195034 lncRNA upstream 77060 11406360 ~ 11409432 (+) False AMCG00005907
TU195024 lncRNA upstream 107203 11378780 ~ 11379289 (+) True G154831
TU195007 lncRNA upstream 115580 11370424 ~ 11370912 (+) True G154816
TU195120 lncRNA downstream 125156 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 143577 11632091 ~ 11638019 (+) True G154915
TU195134 lncRNA downstream 149810 11638324 ~ 11638774 (+) True G154916
TU195135 lncRNA downstream 151172 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 418127 11906641 ~ 11912100 (+) True G154979
AMCG00005908 mRNA upstream 109 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 25749 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005907 mRNA upstream 76820 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005874 mRNA upstream 142888 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005873 mRNA upstream 155371 11324831 ~ 11331121 (+) True AMCG00005873
AMCG00005865 mRNA downstream 6627 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005866 mRNA downstream 69935 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005886 mRNA downstream 113388 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005885 mRNA downstream 194295 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 202307 11690821 ~ 11691592 (+) True AMCG00005864
TU194985 other upstream 161418 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 400481 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 476138 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 570763 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 756283 10722332 ~ 10730209 (+) False AMCG00005834
TU195111 other downstream 113913 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 414872 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1203302 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1204246 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1208834 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile