RNA id: TU195117


Basic Information

Item Value
RNA id TU195117
length 3755
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G154906
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11569273 ~ 11613611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccctcccctcaaaAATTGTTCCTAATGTTACAGTATTATACATCATCACaatagaaatacagaaatggcCGACATTGTCATATGGTTATACACACAGGGCTGGGAGAGACTGTTCAGTTTCAATCTATACAAAGCTATTTCAGGAGAGAATAGCAGATagaacacagacaaaaaaactaaaaaaaaacaaaaaacaaaaaatattttttcccataatgtttttttctttcttaaaatgaggtcctttatgttttttcttttagtttttttgtttgttttattttaaatagataaaaatCCTTCATATTAAAGACTGCAGTAAGTGGTCCCTTGTAGATTTTAAAGAGACGGTGTCCTTTAGTtattcattattgtttattacatcttcatcatcattattattattattattattattattattattataacttaaCACGAGATAAAAGTGCAAAAAGAATTCCAAGCCGCAGTGAATCGCACCCCCGCAGGGTCTGGTTTCCTCTTGCGAGTCTCTGTCCCGTCCTGAGGTCCACCAGGACAGGACACACAGATCCTGCAGCTGCCATCCTGCTATATCTGGCTCATCCACAGCCCAGACCACAGATCTGTCCGTTCTTATTCTGTCCTAGGGATACGAACCCCAAAACGAACCAAAATAACTCAACGAGCTGCAACGCCGATGGAAGCCATGGACCTTGTGATCAGGGAGGACGTCAGCCCTGGAGAAATTGCACATTTCAATGATTCTTTCTGGTTGTATTATCACTTCTCCCCAAAGTTAACTAGTTAATTTGTCAGAGCTATGTCTGCAAAATGATTTTAAGATCAGTCCCATCTAAGCTGAAACTCCGAAGgatgggagagaaggagagacgCCTGCTTTGTGAGTGATCAGACACAGCAGCACGGCCTTCGGTCTATGATTCTGCACCCGAGGCTCCCCAgatcaagaaaaacacaatcccctacttttgtgttttttttgcttggCTATGACAATTGTGCAGAgcagaaaagtgtgtgtgtgtggaggggggggggttattgaTCGGCAGATTTAACACTGCTGTTTTAATAAAAGCTTAAATTCCAATTACTGATCGCTTACTGTCTTTCCTTGCGTTTCTGCGGCTACAGGAGGACTTTAGAAAAGCACACCGTCTCCTTAAATGAAAGCATGGTCTTTTTCTTGTCTTTATCTTTTAtctgtttgcttgcttgttttagAGTGTTGTATTCATTGGTAgtgactgacattttaaaacatgtcaatgatatcaaaatgcattatacagtatttacataaaaataaaaataacaaggaaAAAAGGGTAAGAGGCTGATCGCAGAAGGGACGGGTgcgagggtgtgtgtgtctgtgtgcacgCATGTGTCCGAGTCCCAGTCAGAAACAGGGTCTTGGCCTCAGTACTGTCCGTCCTAATGCAGGAGCACAAAGCAGGAACTGCACAGTCCACATTTAGAGGGGGAAATCATCTGGATAATGCCTGgcaaaaatttaaaaattatattgtttttcccccttgcacaaaaaaaatgtctgtaacATAAATAATTGGCATGTTTTCTTTAACAGTAAAATCTTCAAGTTAGATGAACTGTGGCCCTGGTACTGCTGAACTGGGCCACAGTACTGCTGACTGCTAGTTAACCAGACAACgactgactgaatgacagaCATCTGGAGGGCTGTTCTGaatgaatgtaataaaatcagtcGACGTGAGGGAGGGAGCGAGTGAGTGTGcgacggagggagggaggggacaCCAACGAAGTGTGTATCTCAGTAACCCcctcacactccctctctcacaagGAGCGTCTCAAGGAAAACCTGGGTCGAGTCATTCCATTTGTGTGCAGATCCAGTGggccttcaaaataaaataaacggaaagcaaaagaaaacaaaaaacacctttcGTTCTTAAATACACCTTCAGGAAGAAAAcatcatcaaaataataaaataacagaagatAACAATAAACAGTACATGATACAGTCCCAACAGGTTGGCCTTGAGTTATTGTGTAGacagagaataataataataataataataataataataataataataacaacaacaacaatataataacaataacaaaacaaaaacagtttgcaTGGTCAGGAAGGGTCTGCAGACGGGGCACACAAAGCGGCCCATCCTGCACAACGGCCCGCTCCAGACGGACTGATgaacacaataacaaaattctactagcaaaacaacaacaacaacaacaacaacaacatcctACAGAAATGAAAGTCAGCCACAGCGAGGAACAGCTGGCCAGGTTTGTTTCCAGCAGCATACCCACTGATGTCTGATCCGCTGCTGCTCTTACAGGGAAGCACGGCCCATGATCCCGAGAGGAACCCGACACCGTTCAGGAAGAACCGATCGCATGAAACGCATTGAGAGGCACTCGGTATGGCATGTGTTGAGACACTGCCCTCTAGTGTACAGCTTGGGTAAGGGTGGCTGTCCCACTGAGTGTGTgtggaaggagaaaaaaataaaaaataaaaaataaaaaatatatatatatatatataaaatgtatggtGTTTTTCCACACCAGATAATCCCACTGCATTTACCCAGAGAGATATatgcaggagagagaaacagaaacaaaaaatcaaacaaaagcaatgtcctaagaaacagaaaaatattatattgattaaatatcacagagaaaactaaaaccaaaaaagcGTCACATTAAACAGAGCCAGCGAGGCAAGGGAGCTGTTTTAGGGAACGCTGTGTACTCCTGTGGTACCGAATCTAAAAAAATGGGTGAAATTCCCACAGCGGGGCTCCAGGAGTGAGGGGCGGTTTGCAATAAAAAGCATCAAtcaaaaaatttaataaatatttaaaaaaacacacacgcatgcacacacttCTTTCCTTCGATCGGTCGCAGAGTTTTCCAGCGAGGTCCTCGGAGTTTCCTGTAGCTGTGTTACAGAAAGCTGTGTGTTCAGGGCAATTcggcaaaacaaaataaaagcagctcATCTCTCACAGCCACAGCTACCCACAGAATAACAACGAACCTCGAACAGCcttcaaaacaatgtaaacagaaCCATCGTTGTGCATTAGTGagtcttgttgttgttgttattgagaTTTAATGTGcctttacagaaaaacaaactatgaggaaaaaaaaaaaaaaactaaatgatgaGAGTCACCATCGTCATCAAATCCAAATGCAACCCTTCCTGGCCAATACAAACATTCAGTTTCTTGAATTTGTCCACAACgtgatgaaaaaaaacaaacccccccaaaaaaacacaccaaaaaaccCACAAGAGAAGTGTATGGAGAGCCACCTTGCCAAGCTGTGCCTGTGGCCGATCCCTCTAAGGGGCGAGTCATTGTCCTGGGCCAGTGAGGTAGCCAGGCAGGCAGGGCGAGTCTGAGAGGAGGGACTTCCTGTGGCTCTGAGTCGACTTCCTGCCGCTGGGCTTGCAGGGGTTCTGCTGGATGGGCTTCACAGGGGACTGTGCACACTGACCACACGTGatcccggggggggggggggggggagagagggtaCAGGGgtacaggaggaggaggaaggggagatgggggaggataaaaaaataaaaaaaataataaaataaaataaaaaataaaataataataaaaaaaagaaaatcacacacTCATCGTCATGTTGGGTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195046 lncRNA downstream 193448 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 233631 11374506 ~ 11376205 (-) False AMCG00005875
TU195009 lncRNA downstream 289852 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 325438 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 401660 11207031 ~ 11208176 (-) True G154782
TU195122 lncRNA upstream 63 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 76129 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 318501 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 389529 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 393857 12007468 ~ 12017366 (-) True G155059
AMCG00005912 mRNA downstream 140076 11463610 ~ 11469760 (-) True AMCG00005912
AMCG00005911 mRNA downstream 152611 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005909 mRNA downstream 158342 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005913 mRNA downstream 161253 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005914 mRNA downstream 197647 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005890 mRNA upstream 1781 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005887 mRNA upstream 8817 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005888 mRNA upstream 23527 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005891 mRNA upstream 56742 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005889 mRNA upstream 61524 11675135 ~ 11680822 (-) True AMCG00005889
TU195020 other downstream 255203 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 270722 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 284769 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 697091 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 699404 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1058041 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1230167 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2554479 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2723280 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2895622 14509233 ~ 14509614 (-) True G155770

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032804 False 6467 mRNA 0.39 13 NC_007113.7 41577507 ~ 41620112 (-)
striped catfish (Pangasianodon hypophthalmus) TU87313 True 1838 lncRNA 0.41 2 NC_047598.1 30195679 ~ 30197576 (-)
mexican tetra (Astyanax mexicanus) TU87313 True 1564 lncRNA 0.28 1 NC_035903.1 17677102 ~ 17678665 (-)