RNA id: TU195133


Basic Information

Item Value
RNA id TU195133
length 5929
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G154915
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11632091 ~ 11638019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACAAATGGGTTATTTTACAGTCAAGGGGAGGGGGGAGTAGTATTCACAGACTGTCTCCCTTTTGAAACAGTAAAATAGTCATTCTTAAAgaaaaccataataataaatatgaacatgttaACAAACCGGTCTGAGTGTCAGCATCACTTGTTTCTGGCTGCAAAGGCCTTGTGGGGGGTTTCTCTTGCAGCAGCAGTTTGGGAAAGACCTTCACAATACAGATACCAGTTTCAAATGTGCGTCCACTGTGAagtcagacacacactcacacagataaGTAATCCGTCAGGCCCGAGCTCCCTCCCTTGCAGTAACCCTTTCAGGATCCAGCTGTTGTGCAAGATtgcaaataaagcatttttgtgCAGCGCAAATGGTAATTTTtaccaaaaaaattaaactatAACTTGCAACAGTTTTCACTGTGTATCTGGCCAAATAAAGATGCATGGCTTCTCTCACAGACAGTCACAGTATGAGGGCCCCTGCCCAGGCCTCGTTGTTATATACGTACCCAGTCAAGGTGGGGGCCACAGGTtgggaaactggcaaaacaaattcaaaattgtaTATCTGTGGCCTATGGGGGGGCAGTAACCTTCACCTTATGTAACTGCTCCCTCTAGTGGCAGGTGGACCTTTCTTCACAGACCTCAAATAACTTCACACACAATCTGTCTTTGTTTACTTCTTGGAAAAACTACAACTGTGTAAAGAGATGCACACAAATGTAGCCAATACTTTCAAAGTGCAATGATTGTAGGTGGGAGAAAGAGAAGTTGACCAACACTAAACAAGAAGCCTCTTCCCTCAGGTTGAAAAGTGTTAGACCTTCCTGCATGGAATGGATGAAGCGAGACACTATGTGTCCCTGATCCGACTGCTTGAAGCACCAGGGGTCTTAATAGTGCAAAAATGCCACACTTCTCAACCCGAGCACGAGCCATCACCACAACCCACGGCACGCTACCAGTGCCACACCCACATCACACCAGCCGCACCGAGACCCCGACAGAAGGCGGACTCACTCCCTCATCCGCCCTGCGCCCATCTCCGGCATTCCCACAGCTTTCTTACTAAGTCCCTGCCCCCAACCCGACTAGCCACCACACGTGACACCCACACTCGCCTCCGGAGTTCAACCCAGCAGCTCCCACTGACCCAGAACGCCACAGCAAACGGGGGCGGCTGACCGTGCAGACAGTCCTATTAAGGAAAGGGACAGAAACTAGACTATCTTGGAATCTTCAGGGGTCAAagctcaacacacacacacacacactcgctctTCAAAAACACTGTATAATCTCTGTACAGAACTGCTTCATTGAACTAGAATTTGATTGGTTTTTAACAGGATGTCTCTCACAATACTTTTCTAACGAGGAGATGTGGGGACTTTTGTAAACGAGGAACCCCCGCATCAGTCTTCACAATCAGTTGCACACAAACGAGACCGATCATCTCTGCCCGGAGTCCGTCGGCTCCTCCCAGGCCGACGGGGTGGTCACTCACGGGACAAAACAGGCAGGGCAGGAGGGAGTCGGACGAACGGATTCCCCCGTCAATCTCGTTCAGCGCAAAACACCCTCGCTGTCCCCACATCGCAGACCCTCCTTCAGCCCTGTGCCCTACTTGTCCAGCATGGGGGGGGTTGTGCTTCATTTGCAACTGCCACCTGCAACAAACACCTGTGACACTAACGGGGGGTCAAGGGGTCAAGGACGAGGAACAGGCAATAGACCAACCAGACTGGAAGAACATTGTTGCTTAATAACACCGGTGACCATAAACACCATGGGGGGTTTGGAGTTTGCGGAGACTAATTCTAGAACCTggaagaacaaatcactttttcttttgggtttttaattgtattttgcttCAGCTCAACATCAGGGAGATTCCAGTACACTTGAAACATACATTGTACCCATGCTCTCCACAGTCAATATAGGGCTTTTATATTTACATGGGAAAAAAGCAATGAAATCTTACAGTACTGTACGAGTCCAGGGgaaggacaaaaacaaacaaaaaaacaaaacactaggATCGGTATGTAATCAATTCTGTATGCAAGTTCTCTTTCCAAGacatccaaaaatatatatgctctGGAGCTTTTGTACAAAGTTAAGATGAAAGCATGAATACTTGCAATCTGGAGAGGAGTGGGAAACATGGgggacaataaaaatgaaattctaCTGCATCAATTAACTCACAGGCAAAATtattcaaggaaaaaaaaaaaaaaaaaacattaagtgaATGGGAAAGTTTTTTTCATGGAAGTACAATTTTTATTGATCAGTTTCAACCTACCCAGTAATCTTAGTTTAATAAAGCCTGCTTTGGGATTGTAGCATTAAAAACAGCTCTCCGCTGCAGCCCCCGCCTCAATACAACAGGTCGTTTGGCACGAACGGCACTCCCGGTGCGGTGCTGTACACTCCCGACGCAAACTGGAAGCAAGCAGCGCCATCTAGCGGTGACAGTATGTGCCGTATTCACCGACAAATCCACGTGGGTTGGTGGCAGTGCTGGGTTTGGAAAAGGTTTATCATTTACAGTGTGGCAACAAGTGAAATTATCCGTTCAAAACACGACTGGCTCGCCCGTCATTGAAAACTGCACCGGAGAAACTGGGGGCTGGCCGTTCACCTCCACTGCAAAGGTAGCGGACGCAGCGTGAATCCACGTTAAAAACGCCAACGTCTTCAATCCGATGTGGCGCGGGGGGGAGGGGATTTTCCGGGATGACAAGAGGCCACCGAAGGAGAATGACTTCACGAGATTCAGTGAGGGGAGGCCGTCCCTTTAATCTCGGGGTCAGTAAGGCCGTAAATTACTCCCACTGGGTCCTGTAATCCACAAAGTGCACCCTGAACTGTAGACCAACAGTGCATGATCAAACACGGCTGtgtcttcaaataaatacagaatgaacagaaaggaaaaaagattgGAGGAGccactcatttattcaattGCTTTTGAGAGTCCACACCTGgctcatttcattttaaatgcatatgtaaatatttctgaatGGAGAATAAAACCATGAGGGGGTGACCACTGAAAATGACAAACTTGTAAAGGCCTTTTGGGAAGGACAAAGCAGCTGACCGGCTAACGACAGCAGAGTTGGCTGACCGCTGCGGCTGAAGGGCAGAGTCCGTGAAAAGTGTGCGCGCGCGTTACGTTTGTGAAGGCCGTATGCATTGTGGCAGAAACCAGCAATGCTGGATCACAAGCCTCAGTCCGTGACCACGGGGGGGAGGCTTCAGACTGAGTCGGGTCGTGTCTGTCACCCCAGCAGTTCCCAAACAACCCCCCCATTATAAAGAAACACTGCCACACCACATCCTATTTGCGGTGTGATATAAATACAAAGTGTGATATTAAGGCATTCATTAACCTTTACCCAACTCCCCCCTTCAACAGGTACAAGAGTGTGCAGATGGGACTGGCATTAGATTCCTTCAATAAGTGGTCAAATCGTTAAAAAGAAACCAGACCCCCAAATTACTCCACTGCCACCACTCCTGCCTCTACAGTCCATCAGTGGACTGATCTCACAGTTCTATTACAAGAGTATCAGGTCCAGCAAAGAAATGCATATTCTGGATCTTTAAAATCATGGAAAAAAAGGCCTTTTGCAtcttctctcacacacaatttaatttcatacttgTACTTTGTAAAGGCCATAAAATTAGTAGTAAATTAAGAATATGGGCCAATAGCCCCTCCCACCTCCCATTTATCTGAGGAAGGGGTTGATAAAGTAGTCATAAACCACCAAGCATGATGGCTTGTGTGTATGGCACAAGTTTGGGTTGACAAAGTCCTATGAAAGGGTCCCTCAATACCCTGCCACCTCCACCCCACAAGGAAAGTGCTGAATCTTAAATGTTCACAGTCAATCTGGATCATGCACAGACATGATCAATTTTAGGATttgcaaataaaaccaaaaacaaaaaagcaggcaaaaagtctatccatccatccatccatccatcattCTTCCCTGGACAGCTTGGTGCTGCAAGACACTTCTTTCAAACTCTCAGACTTTTAACTCCCaggaataaactgaaataaataataataataaaaaacaaaaatcaaccaaCCAACCCATTCCTGTACAGCAACTAATGGAACCACCACAAGTGTCCACTGATGCTCAAGATCCTGCCAGGATGGCTACAGAAATGAGAtttatcattcatttattttggattaAATCATTTTGGTGTCAATGTTGGCAAATTTAATTCTTCACCCAAATTCAGTTTGCGAGACACGTCAACAAACCCAGTGGATTAGCGCAGGAAATTGGAAACATTGAATGCATTCAGGTGCAAATCTCCATCCTCACAAAACTAGGCTCTCCTCCGTGCCGGGGAAACGGGTCCGTGGGAAGCAGCGTAAATCCCATTCCCATGGGGTTTGGTCATTTTTTTGTGGTTGCTGTGGACGCCGCCATTTTGATTGAATTGGAGGCGACCATCTTGGCACCACTGGAGCTGGTAGGCCAAGGTCTGTGAGCGGTggcatgttattttaaagcaagGGAAAGAAAGACCAAATCGCATGCCAATGGGACGACAATAACTCTCCGCACCGACAAGCAAAGCAGTTACACAAGACAGATCTTTTGTTGAACAGCCTCCAAATGACTTATAAAAACAGGACCGGTTGGTCTGGAGCACCGCGATTTAATCCTGAATAGGAAGGGATTCCCCCTAAAGGTCACATGTGACGAGCCACACAATTTATAAGTTGGACGACACCTGAACACACAGAACGTGAGGGAGGAGAGAcgcacacatttatatatatacacaaacacaaagaaacaaccACTTTGGACAGTGTAACAGCAAAAGCACCGTGGGCAGGGTGGTCTGGATGACAATTCAAGGCTTTCGTCAGATCGGCTCCCAGGTTTTTGAATATCACATAGGtggctgtgtgtttgagttTACAGTGCTCTTTATTTAAGGTCTGGGGaaatcagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtttaacTGCAACAAAGGGACTCTGCAAAGGCAGCTTCTGAATAAAATACTGTCTGACACAGgaaaaggaaatcaaaagaCACTGTTTTGTAGAGTTCTATAGGAGTGTGACTTTTTGTTTCCCTGTGGAAGtcaaagaataaattaaaaaaaaaaaaaaaatacaatacgtATTCACAGGTGTTCAGCATCGGACACTTCCGCTtcgagaaaaagaaaattatatatatattatatatatactgatcatTTCTCACATTAAAAATCTCTTAAATAGCATACTCATAACATTTGGCATATATTGCGCTGGCTCTGTGTCAACGTGACGACCCGCCCGCTTCCACAGGGGGCTTCTCACTGGCGATCTGCCAAGAGTGTGGATTTTCCTTTTATACCCTTAAGAGATCACCGTGCGTTTGGGGACGGGGGGGTGGAGGTaagaaagaacacaaaacaaaaaagccaaaaCAAAGAATCTAACGTTAGACAAGGTATTCCAGCCGCAGTGTTGCCACCCTGCAGTGAGAGGGACGCCCTCGGGCACATCTTCCAGAAAATCAGCTCTCCCTTTGCCCAGCCCCCATCGCGGCGGACTGCAGACTCTCCTCCCGTGGCGTCTGataagattttttgttttggaatccAGACATTCCTCTGCCCTGCCTGGTTTCccggaaaacaaagaaaattaaataaaagaaaaaaaaaaaaaaaaacaactcgaAGGAACAGTACTAGTGCCAGTTCTGGAGCTGCTGTTGGTCGTATTCTGCTATGAGTTTCTTTATATGTGCCAGTTTGTTGTGGAGATATTCACAGCGATTCTTCTCTTGGCTGTAATTCG

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195120 lncRNA upstream 17722 11613670 ~ 11614369 (+) True G154908
TU195080 lncRNA upstream 143577 11486492 ~ 11488514 (+) True G154879
TU195063 lncRNA upstream 166466 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 215762 11416065 ~ 11416329 (+) True G154847
TU195034 lncRNA upstream 222659 11406360 ~ 11409432 (+) False AMCG00005907
TU195134 lncRNA downstream 305 11638324 ~ 11638774 (+) True G154916
TU195135 lncRNA downstream 1667 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 268622 11906641 ~ 11912100 (+) True G154979
TU195263 lncRNA downstream 332805 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 346644 11984663 ~ 11986924 (+) True G155018
AMCG00005886 mRNA upstream 21940 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005866 mRNA upstream 69464 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005865 mRNA upstream 124654 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005908 mRNA upstream 145708 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 171348 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005885 mRNA downstream 44790 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 52802 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 164413 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005895 mRNA downstream 265333 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005896 mRNA downstream 294165 11932184 ~ 11935207 (+) True AMCG00005896
TU195111 other upstream 26816 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 307017 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 546080 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 621737 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 716362 10913397 ~ 10915729 (+) True G154636
TU195202 other downstream 265367 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1053797 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1054741 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1059329 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 1068472 12706491 ~ 12707437 (+) False AMCG00005987

Expression Profile