RNA id: TU195134



Basic Information


Item Value
RNA id TU195134
length 451
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G154916
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11638324 ~ 11638774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


attttgaaaggatgGTTGTGCCACTGCCTCCGCGTGCGATACCTTGTACTTGTCCGTgccctgctgcagctgcttgAGCTCGGTGTCCAACAACGTGAACTGGTGCGTTATCCTCTCGATGCGGGCGTGCAGCCCTCGGTACTCGCCGTATTCGGCGTTGAAGTCATTTTTGTAGCTCTGCCTCTGATCCTGGGACGCGATCACTGTGTATTTTctacagggagggagagaggaagagggttAGAGTAATAGAAATGTACTACAGGATCAGACAGggatatttttttgttctgtacagTAGCCCAGTCTGTCCCGATTGAGGCCACAAAGGGGCATACCGCTATCAAACCCCCTCTCAGCGAAaaaacagatatacacacacaacccaaAATATAATCCCCATAACATGACATGACCCTGCCTGGCTGCGGTCAGTTGTCAGGGCTGTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195133 lncRNA upstream 305 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 23955 11613670 ~ 11614369 (+) True G154908
TU195080 lncRNA upstream 149810 11486492 ~ 11488514 (+) True G154879
TU195063 lncRNA upstream 172699 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 221995 11416065 ~ 11416329 (+) True G154847
TU195135 lncRNA downstream 912 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 267867 11906641 ~ 11912100 (+) True G154979
TU195263 lncRNA downstream 332050 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 345889 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 562962 12201736 ~ 12203472 (+) True G155053
AMCG00005886 mRNA upstream 28173 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005866 mRNA upstream 75697 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005865 mRNA upstream 130887 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005908 mRNA upstream 151941 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 177581 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005885 mRNA downstream 44035 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 52047 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 163658 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005895 mRNA downstream 264578 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005896 mRNA downstream 293410 11932184 ~ 11935207 (+) True AMCG00005896
TU195111 other upstream 33049 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 313250 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 552313 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 627970 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 722595 10913397 ~ 10915729 (+) True G154636
TU195202 other downstream 264612 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1053042 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1053986 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1058574 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 1067717 12706491 ~ 12707437 (+) False AMCG00005987

Expression Profile