RNA id: TU195177


Basic Information

Item Value
RNA id TU195177
length 309
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G154954
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11689740 ~ 11690048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagagtccctttaagagagtgctcctaatctcagctcgttacctgtataaaagacacctgggagacagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttgtttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtc

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195122 lncRNA downstream 75357 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 76129 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 76129 11609836 ~ 11613611 (-) True G154906
TU195046 lncRNA downstream 273352 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 313535 11374506 ~ 11376205 (-) False AMCG00005875
TU195245 lncRNA upstream 242064 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 313092 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 317420 12007468 ~ 12017366 (-) True G155059
TU195331 lncRNA upstream 435113 12125161 ~ 12126128 (-) True G155073
TU195473 lncRNA upstream 757472 12447520 ~ 12447719 (-) True G155183
AMCG00005889 mRNA downstream 8918 11675135 ~ 11680822 (-) True AMCG00005889
AMCG00005891 mRNA downstream 15388 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005888 mRNA downstream 40418 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005887 mRNA downstream 61808 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005890 mRNA downstream 72927 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005884 mRNA upstream 147953 11838001 ~ 11863038 (-) True AMCG00005884
AMCG00005900 mRNA upstream 206970 11897018 ~ 11902390 (-) True AMCG00005900
AMCG00005899 mRNA upstream 216518 11906566 ~ 11918065 (-) True AMCG00005899
AMCG00005901 mRNA upstream 228740 11918788 ~ 11930850 (-) True AMCG00005901
AMCG00005905 mRNA upstream 294615 11984663 ~ 11993731 (-) True AMCG00005905
TU195020 other downstream 335107 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 350626 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 364673 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 776995 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 779308 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 981604 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1153730 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2478042 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2646843 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2819185 14509233 ~ 14509614 (-) True G155770

Expression Profile