RNA id: TU195210


Basic Information

Item Value
RNA id TU195210
length 5247
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G154979
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11906641 ~ 11912100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataaaaatataacaaaccTACCTGTCTATGCACACTGCTTTGAGTTTCAAACATCCTGTACAATATTCCCAACAATTTATGATTTAGAACACACGCTGCTATTAATCTCATTCACAAATCTGTCTTCTTGACTGTGTGTGATGGGAGCATTTTATTGAAGTTGGAGGGTACCCAATCGGTCAGGCCACTTCTGCTGAAAGCGGCACAGCGGAAAATGGAAACGGAACGATCCTGCCACCTCTCCACGGAGGTTTTCCCCCGATCTGAAGAATCTCGCTTCACCCACTCAAACCAAGGCCTGGACCCGAGATTTGGCTTCAGTGTATTGATACACGATGTGACAATCTGTTAGTGTACAGTTTAAAATCTAGCTGTAGTCCTCTAGACACTGACTACACTATACAAGGATTATAACACAGATCGGTACAAGAGCACAGATGGTTTGGTTTGATCTGAACACTAAGGCAAATGGAGACATGCTTTACATTGTGTTCTTCCACAGGGACTGGTTCGTGTCAGAGCAGGTTGAAAACATTTATCCTCTTCACCATCACTATTATAATTActatcctttcttttttcttttttgaaggtGATCTGCTTTGAAGGTTAGATCAATTGGAAACCGTAGTTGTTATTAGGAATAATATATTCTACCAACCAAAGCTGTTCGGTTCTCAAGAGCCACTGTGGTTCCAATGAGCGAGAAACGGCTGCATGAGAACCCAGACTGAGAGatttaatttgtccaattaagcaatttcaATCCCTCACCccgtccacacacacaaaaaaaggccTTCTGCATATGTATCCcatgtatctgtatctgtatatgtatctgGCTGGATTTCCGTGTTGCTATTTTACAAGCCTATGAACGACCAGGTGTGCTGGGTGACCCCCTTCAGGGACAAATTAAATCGGAAACAATTAACTCCACACCTTTCACGGCTGCCGCTGAAACAGGAAGTGGTGGGTATACCGGCTGCCTAGGTGTCAATCGATCACCCGTGATAAGGTCATGATTGTGTTGCTTAGTGTGATTACAGGGGACCCCCTTAACGAGACCCTGTAACCCATTCTCACTGTCTTCTCTTTGATATTTTCTGGCAAGAGGTGGATCTTCATGACTGGAGAAACAAATCTGCTGTGTTTAGCCAATCATAATTCTTTAAAGGTGATTATAGTTTTtgtcatagtttttttttattgcaatcaCACAAGTAAATCatgtttactgtttttattattattaataatactactactattgttACTATGAATTTGTTCCTGATTCAGCAGCGACTTCCATCAAGTTCAGACTCCGGCTCCAGCTGGTTCCAAACCAGTGCAAAATCCCAACAGGACTAACCACAATGTACTATAATGCAGAAACacagtcttttcttttctttccgttttttttatatatatatatatatatatatatatatataattctcaAAATTATAACACACATCAAACAAATTTCTATACAAAATTCACAAAAGCTCATTTTTAAAGATCgttcaatttcaaaatgaaaaactaaaacgaacaaagaaaaaaacatcactgtagctttgtttggttttgttaaagAGAAATCCAAGGGCAGCAATGATTTATAATAGAACTGGTTAGGTCATATGTGAAAGCACTGTcgtttcaattttaaaacaccCCCCACAAAgtcagcagacacacacaggtgttTTACAGACCTCTTTCCCATGAACAAAAGCAGGTGAAGATTTACAAGCATAAATCATATGTATTTCAGGCTTGTGAGATTAGCATCAGGCCCATTGAAAACATATATAGCatagttgaaaaataaataaaaataaaactgcaaaaaaacagtTATAGTCACTGGTTACGGGATTCCTGACACGAAGGACGATATGCCTGTGGATTTGGCGATACGTAACATAAATACAACACCTTCATCACGTAGCAGGAAACGAAAAGTAGGGGGCTGTCCTGTTCAtgattttctccatttaaaaaaaatgtttaaatgatcttttttctcatttaaccAACTAACAAATCTGTACCAAAggggttttacaaaaagctgaAGAATTCTTGCACAAGTTGTATCTCAAATGGTTTGTTTGGGGTGCCCTGTAAAACCTTAGGTCAAATTAAAGAGCTTGCCCCCACTTCTGGACTATGATTAATGCCACTTTGGAGGGAAACAATAACATGTGAACAAAATACTGAGTCTCCCTCTTTATTACGTGATatcctccaaaaaaaaaaaaaaagatggttcTCATTATCTGCATAAAAGTAtccttacaaaaaacaaaatgcttagtAGATGCCAATAAATTATAGTATACatcattaatatttttcttaggtttaaagtataaagtaaaataaaaatgatcaacCATGCGTAATGCAATTTCAAAGCTTCTGAGGATCATAAATAGGAGTCGTTTCTgcttgtatatatttaagaagCACTGATTTCCtataaatgcttatttttatgtCAAGGGGGAATCATTCCATCTggttaaaacacacaagaacaaaATGTGCTGTACTTGAAATTCCTTTGATTTCCATACTGTGAGGACACACTGTCTTCAGTCTTGGTCTCAATCTCTTAGTGTTTACGAGTCCAATTTCGAGTTTCTCTGAAGAGACACTTTCAAAATCCGCTCAAATTTCTTCATGGATTTTGTAACCCATGGTGGAGAAGTATTTCAGTGTTCTGCCATTTAAACTCAAAGTGCTAAAGTTGGGGAATAAGGGCAAATATTAAATAAGCCACCTGCCAGAGGTTTCTTTCATAGTCCTGCAGGTGTACAGTTGAGGGCcatgtttaatttgctttttaatcatGTGGTGTCCAACTCCTTTGGGGaatgcattactttttttttttctctctttttgcaCATGTACTGAAACAGGGGACTTCCCGAGGGTTTCTGCTCAAGCAACCGGACAACGTTAATTAAAATTCAGTTCACGagtgttgttttccatttgtgacAGCAGTTCAGTTCCTGCCGCGCTGATGTGTGCTTGACCTCCGGATAATTTAGCAGGGCGCAGTACAGAATTATAGTACACGTCTTGCCAAGGTCTAATATGAGAAACAACAGTACGATCCAAGACTGTTGCAAACTTATCCGGGTGCCAAATTTCCAAGGACCTTTATTAGTTGCTTTCTTAGGAGCTAAAGCTGTAATACATGTGCCTTTTTCTTGCGTAgtaaagcaacaacaaaaagaaagcgCAAAATAGTCTGAACCCTCCTGGGAAGAGCCTTTGTTTCCTCTAAAAGTAGCGTGCGtgctttaagaaaatattttccaatCTCGCAAGCGAATATTGTTTACAACATTCCTACCACTACAACATAAACtatctttcaaaatatataaataaattactatttatAGCTGACATAACCTGTTAGGagtttttcattgattttaattaattaattgttttttaaataatagcaaCAGCGTTTCTGCTTCCATGGGGGACACAGTAACGTGATTTGCCTCCTCACTCTTAGGGAGTTTTGCGACCGCCGCAGTAGGCATCACCAGGAGGATCAGGAGAAGTTTAATGTGTTCCCGCTTTAAAAGCAGTTTGCtgtcctttttcattttctttaacactGAGGTGATGTGAAGGAGCATTAACAGTCTGGAATCTATTAATGAGGGTATTGTTAGTGGTGCCGTCTTTAAAAAATCAACTGCAACATCGCCGCTGCTTGTTTTGTGGTGTGTTGCAGTGGCAGAGGGACTGAACACGAATGGCAGAAGTTTCCAGTGAGAGCCGACTCCTGAACAGCCAAAGCCGTCGGGCAAACCCCTCTCGGATCATCAGGCCCTACTATTCCACCTCAAAATAAAACGTAGGCTTCCGAATTCGCTTTATCGTTAGCAAGCTAAGATTTAAAAGACACAGAATAAATGGCCACCTTTTCCGAGGGAGGAAGCGGAAAAGGCAGATACTGGCAGCACAGGGTGGGTCTCGGGGAACTTTTATAATGGCAAAGTAATCTCTCCCACACACCCCCTCCATTCCATACTCAAAATCCTGAAAATCCTGAGACCAGCCTTAGCTTTGTCCCTGCTTGCGAAGTGCGAATGTTCTAGAACGGAGATTACTATTTTAGAACCCACGTCTGCCTCAAACTGCCTTCCTCTGCAGACTTTTACCCTCTTCCAAAACCTGAAGCACAGTGTCAAGGGGTGCTGCTCCCCCATCCCCCTAGTGGTGACCTAAAGCATGACACTTCAAGACAGGGCAGTGTGCCTTAAATAGGAGACCAGACAgaattaactctctctctcagggattCTGAAGGCTGTTTTAGTTTGATGGCCCCCTCCCCCTGAAATAATGCACAGTCCCTTTTTCTTCAGAGACTGCTTGTATTTCAGCCACCccgcctccccctcccctcccttttacaggaggaggagaagaggaggcaggacagcacaacaacacactggGGGCTACGTGCAGCtggagaggagggggtggggcgGTGGGCTAGGAGGGGGTGTGTGAGGGTGTCTCTTTAGGATGTCTTGACCAGATCGTAGACGTGGATATGGAAGTCGTCGTCGTATTTGATGTAGTAGACGGAGGGCTTGGCCGGCACTTGGTAAATTACCAGGCCGGTTCTCTTCACCCCTTTGTCAGTGACGTATTCCACCTGCTTACCCACGAGGCTCTCCGTTTCCTCCCCTGGCTTCCTGTCTGCCGGAAGTAGGTGTCTGTTCTCTCTTCAGGTAAGATGCGCAGGTCTCCATCCTCGTAGTCGTCCCACAGCTGGTACATGTAGAGCACTGGGTCCTTCTCGTAGGTGATGTAGTACCAGTTGGTCATGATGGGCGCCCGCGAGAGGACCATCCCGCGCCACTCGTTTTTCTCGCCGTCCTCCTTCTCGAACAGGTGCTCCACCGCCTTGCCCACCAGCTCCTCTGCGTCGCGGGGCATCTTGATCTTGTTGTTCACTGTGTGGGACAGAGCGCGGCGGTCAGGAGATGCCAGGAACAACAGGAAGAGAGGTggggagagaaggaaggaggagggagagcgGCTAGCACTCCAAGGTTGTGTGGGTTAGTGTGTTTGGAATTACTCAATGCTGGGCTTTGTGTGTAGAGCGTCTATCTCAGAGGCCTGCAGAGCAGTGATGGTTtaatttggtttttaattctccCAGCTGAAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195135 lncRNA upstream 266715 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 267867 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 268622 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 292272 11613670 ~ 11614369 (+) True G154908
TU195080 lncRNA upstream 418127 11486492 ~ 11488514 (+) True G154879
TU195263 lncRNA downstream 58724 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 72563 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 289636 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 535380 12447480 ~ 12447684 (+) True G155182
TU195509 lncRNA downstream 633122 12545222 ~ 12585408 (+) True G155207
AMCG00005895 mRNA upstream 554 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005883 mRNA upstream 82004 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005864 mRNA upstream 215049 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005885 mRNA upstream 219866 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005886 mRNA upstream 296490 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005896 mRNA downstream 20084 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005898 mRNA downstream 23749 11935849 ~ 11938386 (+) True AMCG00005898
AMCG00005897 mRNA downstream 40261 11952361 ~ 11972073 (+) True AMCG00005897
AMCG00005903 mRNA downstream 84724 11996824 ~ 12003499 (+) True AMCG00005903
AMCG00005904 mRNA downstream 101428 12013528 ~ 12017391 (+) True AMCG00005904
TU195202 other upstream 797 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 301366 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 581567 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 820630 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 896287 11007544 ~ 11010354 (+) True AMCG00005840
TU195527 other downstream 779716 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 780660 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 785248 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 794391 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 799678 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU327481 True 2388 lncRNA 0.40 3 CI01000075 330504 ~ 336468 (+)