RNA id: TU195266


Basic Information

Item Value
RNA id TU195266
length 1975
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G155018
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11984663 ~ 11986924 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCATGACAAAGAGGTTTATGTTGGGATAAAATAgcagtacaaaaatacaaaaataagttgATACGTACATTTGGAAATTCAGTCTCATGGTAAATACAGTTCTATTTACAAGCAGGTATAATATAGGTTATAGCACAACACATTACAAGAAACAGTAGATTAGAATTCATTATCCATGTCACACATGAACACAGTTAATGAAATTAGCGTCACAAATTCAAATCACATACGTTTTCTtctcaataaatattttaatttaaaggaagTCCAaattgtgttcagtgtgttttttaCATACAGATATAAAATCCTTttccattcaaaaacaaataaaatgagcagcatgtatttttaaatcagtttagaAAAAGGGGAATTCCTCCATTAAATAAGATGTTTCCAAATAACACTGGAATTTATTTAACAAGAAGggaaattaaaatcttaaatctGTAAAGAGCTGATAAGgaacatatgaaaaatatgatttctcCCCAATCTAaagattataatatatttatgtggATAGAGGACAAACAAAGATAGCAATCGGTGGGACACTGCCTGGCTGATAAAAACTCCTACGTCTTTGCGGTTTGGGTTGGAATTTGATTGCAGTTTGATCAATTCGATTGAGTGTTCGATTGAAGTGGTGGACTGCAGCTCAAGTCTTAACAGTCTTCATTAAGaactattaatacaaaatgtaaaaaacatgtAGTTTGGCACATTACCAAATACTTAATTAAGAAGTGAGAACTGTAGGAGATGAAGGTTGAGGTAGCCCCAGTGTAATGCAGAGAATCTCTCTCTATTAAGCTGTCCATGGTTTGAGACAGTATGGCAAAATTGTATGTATCATTAAAAACTCAAATTCTACTTTCTAAATATTAGAATATTAATAAACTCAAGAAGGGTCACACTGTTTTTTAATCCTAAATCATTGTGGTTCCCCGTTTTCTGAACACTAACTGTCCGTATCAtcaaattgaaattaaacaattaataattgACCTGATTggtatatttctgttttactttaattattaatgtaaaacattttgatatacatttttgagAGCTTTATGaacacagcacagaaaaaaacaaaatcaaaaacatgagaaaaatgtaataaatatagctCTAAAAAAAGAGGGTGTGATTCGtatacatgaaaaacaacaatatacaaatacaaatggtttttcataatttttgcTCCAATAAATATCCGTGgggttttatttacaatattcaCATTTCAAGCCACCTTCGTCCCTCTTCTGCTCGGCTGGTCCCTAATATAGGCCTCCGTTTCTTGGGAAATCAAAACTATCAATGTTGGAAATGAAAGATGGCAGCAATTCTTTTCTGATAACATCTCACCCTGAAAAAAATGTAGGTTCTTCAATCTGGTACTTATAATTATCTTGGTATCTTATTCTTAACTGGGTTGTAAAGTGACCTGTAATTGGATCtcccttttttaaaacaagtgcgGTTATTTATCTATTACTTGGAAGAATCAGATCCTCTACTCTCATTATTGTGCAACAGATaggtgggtgtgtgtctgtctgtctgacttcGTCCATCTGCTTTCCCTTTGTTCCTGGTCTTCAGAAAAATCTCAGTCATCTGACCTAAGTCAAGGACTCGCCTCTCTGCTGGGGTAGCGCTTCCTACACCGAGTTTTCCTCGCTCTCATCTCGGCCCAGGGCATGTTTCGGTACATCTGGTCTTACGTGTGCAGTAGCCATAGTGGCGGATGCCGATGGATCTGCCCAGGAAGCAGGTTGCCCGTCGCAGGTGGCAGGCGCTGGGGTAGGTGATGTTGTCGTTGCCGCAGATGGGCTGCTCAGATGCCATGGGCGGGGGGCAGGGGGCCGTGCGACACATGACGCAATGGGCGCTGTCGGTCTGGTCTGTCACACAGGTATGAGTGCCCGGGCACACCACGTTGGAGCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195210 lncRNA upstream 72563 11906641 ~ 11912100 (+) True G154979
TU195135 lncRNA upstream 344737 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 345889 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 346644 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 370294 11613670 ~ 11614369 (+) True G154908
TU195305 lncRNA downstream 214812 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 460556 12447480 ~ 12447684 (+) True G155182
TU195509 lncRNA downstream 558298 12545222 ~ 12585408 (+) True G155207
TU195499 lncRNA downstream 566501 12553425 ~ 12554767 (+) False G155206
TU195507 lncRNA downstream 624259 12611183 ~ 12631371 (+) True G155206
AMCG00005897 mRNA upstream 12590 11952361 ~ 11972073 (+) True AMCG00005897
AMCG00005898 mRNA upstream 46277 11935849 ~ 11938386 (+) True AMCG00005898
AMCG00005896 mRNA upstream 49456 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005895 mRNA upstream 78576 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005883 mRNA upstream 160026 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005903 mRNA downstream 9900 11996824 ~ 12003499 (+) True AMCG00005903
AMCG00005904 mRNA downstream 26604 12013528 ~ 12017391 (+) True AMCG00005904
AMCG00005902 mRNA downstream 40757 12027681 ~ 12068052 (+) True AMCG00005902
AMCG00005894 mRNA downstream 160568 12147492 ~ 12165856 (+) True AMCG00005894
AMCG00005892 mRNA downstream 183156 12170080 ~ 12171314 (+) True AMCG00005892
TU195202 other upstream 78819 11903386 ~ 11905844 (+) False AMCG00005895
TU195111 other upstream 379388 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 659589 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 898652 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 974309 11007544 ~ 11010354 (+) True AMCG00005840
TU195527 other downstream 704892 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 705836 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 710424 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 719567 12706491 ~ 12707437 (+) False AMCG00005987
TU195534 other downstream 724854 12711778 ~ 12714013 (+) False AMCG00005984

Expression Profile