RNA id: TU195312


Basic Information

Item Value
RNA id TU195312
length 1236
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G155058
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12003140 ~ 12023672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATCCAAGCAAGGaactttattttgtgaaagttgTTACAGAGACGAccatttacaatatttgttaGTGTTGTGTCAGGCAGAATAAGTTTGGGGGAAAACACCCCATTTCTtctggtgatgaaatgtaaatcaaaatattgacaatACTAGTTCAGTAAATACAATATGACTTACACAACTTCTATAAAAGGGGCAAAATGTGACATTCCATAGCTGTACCAAATTTAAATGCCCTTTAAAAACAGTAACCTTTCACAGGCACAATGCCAACATGCTTTAATTCTCAGTTTCACCAATGTACTTTGCACAGGTAAATCAGCACAGAATAAGCCAGGGGGAAAGCTTTTAAGGTGGTCCACTTTTTTCACAGGGACTggtaaaatagatttaaatgtgtaactATGGCACTAGAAAGAGGCAATTTATACAGAGAAGATCTGTGGGGAAAATAAACgctttccaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaacattatatatttttatgtaaaatataagtGTCTCCTTCAACCTCTGAGAGAAGAGACGTGCACATGATGGTTGTTGGTTGCAGTTGACATCCTGGGATTTTCACTGGTAACGCCACCCCCGAGATCTGGCCGGATCCATCTTCGGCTCCTGAAAGGTTCCTCAGGTTCATTCGCTCGAGTCCAGTGCGGTGGAAAGGGGGTTCAAAAACTGAACGCAAGTGGAAGGACGGTAAGGAAGTGGAAGTTTTTTCTCGAgttcaggaaaaaaagaaacaaaaagaatcGTACGTGTGAGATTCACGTGGTCTGCACTGCGCCGCCCTTCACTCTGCAGAGCCCTTGGATGCCATGAGGTTGATGTGATGTGTGATCCTTGGAGGAggccaggaggaggaggaggaggaggaggaggaggcggcggcggcggtGGTGGGGCGTGGGGACCAATTTATGAATTGTTGGCTGTGTTCTCGTTACTgggagagctggaggaggacgaggaggaggaagaggagaagttCATCCCTGATAGACCCGGAGGATTGGTGGCTGTGTTCTGACCACTTAAGCTTTTCCTGCACACGGGACACGTGTCATGCTACAGGGCAGGAGACAAAACAGGACAGAACCAATAGATgaacaaacagagaaaaaaagagcaGAGCAGTAGAAATGCCTAATCCTGCTTGGTCTTGTAGACTGTTAAGACCTTAATCGATGAGCTGCTAAAGCCAATCATGA

Function

GO: NA

KEGG:

id description
ko05230 Central carbon metabolism in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195245 lncRNA downstream 70193 11932112 ~ 11932947 (-) True G155003
TU195177 lncRNA downstream 313092 11689740 ~ 11690048 (-) True G154954
TU195122 lncRNA downstream 388757 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 389529 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 389529 11609836 ~ 11613611 (-) True G154906
TU195331 lncRNA upstream 101489 12125161 ~ 12126128 (-) True G155073
TU195473 lncRNA upstream 423848 12447520 ~ 12447719 (-) True G155183
TU195546 lncRNA upstream 582051 12605723 ~ 12611445 (-) True G155235
TU195581 lncRNA upstream 672027 12695699 ~ 12696319 (-) False AMCG00005992
TU195584 lncRNA upstream 678465 12702137 ~ 12702641 (-) False AMCG00005992
AMCG00005905 mRNA downstream 9409 11984663 ~ 11993731 (-) True AMCG00005905
AMCG00005901 mRNA downstream 72290 11918788 ~ 11930850 (-) True AMCG00005901
AMCG00005899 mRNA downstream 85075 11906566 ~ 11918065 (-) True AMCG00005899
AMCG00005900 mRNA downstream 100750 11897018 ~ 11902390 (-) True AMCG00005900
AMCG00005884 mRNA downstream 140102 11838001 ~ 11863038 (-) True AMCG00005884
AMCG00005893 mRNA upstream 63371 12087043 ~ 12119953 (-) True AMCG00005893
AMCG00005960 mRNA upstream 170908 12194580 ~ 12212371 (-) True AMCG00005960
AMCG00005959 mRNA upstream 215661 12239333 ~ 12246234 (-) True AMCG00005959
AMCG00005961 mRNA upstream 243413 12267085 ~ 12280796 (-) True AMCG00005961
AMCG00005919 mRNA upstream 301428 12325100 ~ 12326263 (-) True AMCG00005919
TU195020 other downstream 648507 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 664026 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 678073 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 1090395 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 1092708 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 647980 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 820106 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2144418 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2313219 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2485561 14509233 ~ 14509614 (-) True G155770

Expression Profile