RNA id: TU195313


Basic Information

Item Value
RNA id TU195313
length 815
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id G155059
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12007468 ~ 12017366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACAATCTCATCGGGCTTTCGCCTCTTCTCGTAGATGAAGATAACGGTGACCAGGATGATGACCTCTGCCACAATGCCAAGGAAGGGCCACAGGGCGGCGAGGCGGCTGCGCACACGCAAGTGGATCTTGTCGCGGTTCAAGCCGATGTCGTTCTCGCCGACGCACTCGTAGTCACCCATATCGTCTTCCATGTCCAAGTTATCGATGTACAGGATGGTCTTCTCCGGGGTGCTCTTGATCTCGTACTTTCCCGCTGTTCCATTAATGGGTGTTTCTGCACCATTTTTGAACCACATCCAGGATGTTGGCAGGGGATAGCCATGGCTTACACAGGTGAGCACACCTTTGTCCTGCTCATTTCCATGCTCAGAGTGCTTGTATGCTTTAACATGAGGGGGCATTTTGACTTCAATGCTTTTGTTGGCTTCAGGGGTGATGAGATACACACAGGTATAGATCCCTCCATTTTCAGGATTAAGATTCTTTAGCTCAAGCTTCATGAAGGGATCACTCTTTTGGTCCTTGGTGTCCTTAATCTCTTTGCCGTTCTTTACCCAGTAACGACCTTTAATTTCATTTGGGGGGTTTGTCATGTTGCAGGACAGAACGGTGGAAGAGATATTGCTTGCCTCCAGAGGAAAGGTCACGATCTCAGGAGCTGCTCTGTCCTGAAAGCTAGCCGTAGTGTTTTACGAAGCGCtgtttaatctgtatttatttcgcAGCCGAAGCCAGCGGCCTGTATCTCTCCGCTCCGCCTGTAGGTCTGACTCCAGCGCCGACTGTTGTCCTCTATTTGTTCCCACGCACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195245 lncRNA downstream 74521 11932112 ~ 11932947 (-) True G155003
TU195177 lncRNA downstream 317420 11689740 ~ 11690048 (-) True G154954
TU195122 lncRNA downstream 393085 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 393857 11569273 ~ 11613611 (-) False G154906
TU195331 lncRNA upstream 107795 12125161 ~ 12126128 (-) True G155073
TU195473 lncRNA upstream 430154 12447520 ~ 12447719 (-) True G155183
TU195546 lncRNA upstream 588357 12605723 ~ 12611445 (-) True G155235
TU195581 lncRNA upstream 678333 12695699 ~ 12696319 (-) False AMCG00005992
TU195584 lncRNA upstream 684771 12702137 ~ 12702641 (-) False AMCG00005992
AMCG00005905 mRNA downstream 13737 11984663 ~ 11993731 (-) True AMCG00005905
AMCG00005901 mRNA downstream 76618 11918788 ~ 11930850 (-) True AMCG00005901
AMCG00005899 mRNA downstream 89403 11906566 ~ 11918065 (-) True AMCG00005899
AMCG00005900 mRNA downstream 105078 11897018 ~ 11902390 (-) True AMCG00005900
AMCG00005884 mRNA downstream 144430 11838001 ~ 11863038 (-) True AMCG00005884
AMCG00005893 mRNA upstream 69677 12087043 ~ 12119953 (-) True AMCG00005893
AMCG00005960 mRNA upstream 177214 12194580 ~ 12212371 (-) True AMCG00005960
AMCG00005959 mRNA upstream 221967 12239333 ~ 12246234 (-) True AMCG00005959
AMCG00005961 mRNA upstream 249719 12267085 ~ 12280796 (-) True AMCG00005961
AMCG00005919 mRNA upstream 307734 12325100 ~ 12326263 (-) True AMCG00005919
TU195020 other downstream 652835 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 668354 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 682401 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 1094723 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 1097036 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 654286 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 826412 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2150724 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2319525 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2491867 14509233 ~ 14509614 (-) True G155770

Expression Profile