RNA id: TU195699


Basic Information

Item Value
RNA id TU195699
length 2899
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G155354
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13036477 ~ 13039375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttctagaaaAGTccctgacatttgtttttgtgtttgttttgtaacgTATTAACTACAGAAGAGGATtataatctaaaacaaaatccactAGGAAGTcccttaaatataaataataatatttataatcataACATCAACAAACAATAATCATAACACAAGACATTGCTTTTATCCCATTTTTACAAGAACACATACCTTAACTGTCCTAACACAAGGACCCCAAAACTtatatctgtttctttctataCAAAAGTTTTGTGACTTTGCAGCAGGTGAGACTCGTTCGCAAAAAAGTGATGTCGTGAGATTCGTTTTACTGTGAACAAGTGACGTTATTTCTCTTCGAAGCGTAAACAGTACTTTGACTCTTTCTTTATCAGGTCGGTTGCTTTATTGCTAAGTTGTGTGCCTTCTTTTAGGTTTCAAAAAGGAGATGAAATACTAGATCTTGGCTTGGGTTTCCATTCACCACCAAGCGCGAGTGAGGAGCTGAGGTTTTAGATAGGTGCTGCGGAGACAGTGCAGAGCAGGTCAGGTGACACACTAGTGTGTCAAAACATCGACTACAATAAATAAGATACCACTGATTTCAGTAGAAATATATACAAGTATAGTAAAAGACTGCATTTCTTAGCATGTTCCAAAGGCACTGTGAGAAAAAGGAGgctgttattgatttatttatcccCCCACACTGTGGAGAAGTACTGATGGGAGGTAAGGCTAAACCTACTGGGTATGAAGACCTTAACACGGGTCGGGTTCAATGTGCATCCAACTTCGGTTTATTGGTTTGCTTTCTTGGGACGTTTAATACTGCTTCTTTGCATCACACGTGTGTTCGCGCCGTCGCCGAGGTCAGGCTCACGCGTGACTGCATTACGAGAGGGCACTTCCGTCCCACTTGCGTTTCGGTTCGGTTTGGTTCTGAACACGAGAAATGGGTTTAGTCCAGTTTGAGTCTACACCGCGCACGTGAGGAATCCGAAGCGTACTAAAGCATTTTGGACAGGAGTTCGCAACAGTGCggagaggaggtggggggaCTTGTATTGTGGTTGCGTTATGGCTCTTAATCCTTTTTTAACATCATATCCTGCTCAACCTTCTCTAGCCAGCAGGGGGCGACGTAGTCCGACCAAAACGAGAGAGCAAAACTCGACGGGAGAGCGTCGGGGACAACAAGCACAGACAGGTGAACTAGACCGACGGGAGAGGGAGTTTAAAAGCACATCTTTCTTTTGCCTTGAAGACTAAGAACTAAAACAGTTTCAAACCGACAGACATCTCACCCACTCCTACACGTCTAAGGGGCACAGTCCTATCCCTCCcggacagacgcacacacacagacagacagacagacagacaggtctGGTACAGAAAGccctactgtttaaaaacaagcaGCGTGACTTTCTCCGATTTCAGACGCCCACTGAACTCTGTATTCTGCTTCCACAGTAAGCAATGCATTTCAGAAAGATTCTCTCGTGTCTGAAATCTAGACTGAAACTTCTCTCTCTCGAGGCTACGAGCGTCAGAACAGTATACTGCGGACCCAAAGCGACGACCCTGCTGTCGGGACAGACACTGGGGCAGGGGGTGAGGAAGGAAGTTcattacaaatcaaataaaaaaaaatatatattcatgatAAATACCAGCACTTTGAAGAAAACGTGACCCTAGTTTAGTTCCCGGTCTCTGGGGTCGACTCCGAAAGCCACATGGGCCTCCCTGGTCCTGCCGGGCACTCGACCCGCAGGAATTACAGATGTCTTTCCGTCAGACTTGATTTGATTCCCGTTTCCGGTCCCTAGTTGCAATCCCACTGTGCCCGGGCGTGCAAACACGGCAGCCCCGCTTCCCTGCAGCCACACAGCTGCCCCACCACCCCCAGCTCGCCCCGACCCAGAGGCTCCTCGCTGGGTAGCCGGAACTGGATGACCGACTGGCGCTCCGGGTTGGTCCGCAGCATGATGTCCAGGACCTCGCGGACGTTGATGGCGTCGCTGCCGCTGCAGTGGCCGTTGGGCAGCGAGGGCGCCGATTGGGCTGGGGCCAGGGGGGAGGCGAAGGGGACCGGGGAGGAGGCCGCGGTGGGGTGGGACGTGGAGGCCTTGCTGGGGGCGGGGGCGGAGGAGGACGGGGCGGCCTGCGTGGAGAGCGGGTAGGAGGGCGGGAGGCTCAGGGCCGCGTCGTCGAAGGAGAAGGCGTCCAGGAAGTCCTGCGTGGACAGGTTAGACAGAGCCGCCTGGGTctcttgctgttgctgctgctgctgctgctgctgctgctgctgctgctgttgttgtgtgtgcagGCTGCTCAGCTGCGTGTGCGAGATGAACGACTCCAAGCTGAAGTCCTCCGGCGGTGGGAGGGCGCCCGTCGTGCCCAGCCCCGTGCCACTgtctggggtgggggaggggctgGTGGTGAGGTCCAGGATTTCCTCCAAGGAGTTGACGTGGTTCCTGAGGGGCAGCATGCCCAGGCTGGACAGAGTGGACATGGCGGGGAGACTGGATAGCAGGGAATGGGGATTGGAGAGGTCAAGGGGCACCTGCCTGGCGTAAAGGTTTTGCAGGAAGCTGTGCGCCCGCTGCTCCTGGGCCTGCTGCTCCTGTGCCCGCTGCTCCTGCGCCCGCTGCTCCTGCGCCCGCTGCTCCTGCAGGGCCCGCTGCTCCTGCGCTCGCTGCTCCCTCTCCCGGCGCCTCCTCTTCACCTCCTCGTCCATCTGTGTGAGTTCGTCCCGCACCCGGGCCACGCAGTTCTCTGGGATCTTGATACCTgagaggagcagagagagagagagagagaggcaggaagAGTGAGAATCAGGAACACCAGAAGTACGCAGAgaaattccaaattccaaattccaattctTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195698 lncRNA upstream 117 13034087 ~ 13036360 (+) False G155353
TU195696 lncRNA upstream 683 13034087 ~ 13035794 (+) True G155353
TU195693 lncRNA upstream 11009 13024620 ~ 13025468 (+) True G155351
TU195692 lncRNA upstream 13441 13022334 ~ 13023036 (+) True G155350
TU195616 lncRNA upstream 99358 12920100 ~ 12937119 (+) True G155297
TU195700 lncRNA downstream 61 13039436 ~ 13039635 (+) True G155355
TU195701 lncRNA downstream 1144 13040519 ~ 13040980 (+) True G155356
TU195702 lncRNA downstream 4894 13044269 ~ 13044559 (+) True G155357
TU195703 lncRNA downstream 5775 13045150 ~ 13046036 (+) True G155358
TU195705 lncRNA downstream 8200 13047575 ~ 13047895 (+) True G155359
AMCG00005964 mRNA upstream 3069 13028579 ~ 13033408 (+) True AMCG00005964
AMCG00005963 mRNA upstream 16183 12995584 ~ 13020294 (+) True AMCG00005963
AMCG00005965 mRNA upstream 40997 12969874 ~ 12995480 (+) True AMCG00005965
AMCG00005935 mRNA upstream 141844 12894267 ~ 12894633 (+) False AMCG00005935
AMCG00006062 mRNA upstream 196813 12785301 ~ 12839664 (+) True AMCG00006062
AMCG00005925 mRNA downstream 57694 13097069 ~ 13107823 (+) True AMCG00005925
AMCG00005926 mRNA downstream 71469 13110844 ~ 13117181 (+) True AMCG00005926
AMCG00005942 mRNA downstream 198947 13238322 ~ 13240049 (+) True AMCG00005942
AMCG00005941 mRNA downstream 205419 13244794 ~ 13250175 (+) True AMCG00005941
AMCG00005940 mRNA downstream 227007 13266382 ~ 13273509 (+) True AMCG00005940
TU195694 other upstream 3069 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 322464 12711778 ~ 12714013 (+) False AMCG00005984
TU195532 other upstream 329040 12706491 ~ 12707437 (+) False AMCG00005987
TU195530 other upstream 337947 12697348 ~ 12698530 (+) False AMCG00005987
TU195528 other upstream 340158 12692760 ~ 12696319 (+) False AMCG00005987
TU196052 other downstream 1058429 14097804 ~ 14098696 (+) True G155637
TU196053 other downstream 1068798 14108173 ~ 14109870 (+) True G155638
TU196155 other downstream 1336620 14375995 ~ 14383580 (+) True AMCG00006009
TU196402 other downstream 2064081 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 2067834 15107209 ~ 15107734 (+) True G155932

Expression Profile