RNA id: TU195785


Basic Information

Item Value
RNA id TU195785
length 368
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G155426
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13252122 ~ 13252489 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtggggaagcaataaaaaaggcaaacacaatgctagggtatattgtcaaaagtgtagaattgagcacaagggcagtgatgttcagactgtacaatgcactagttggacctcatctggatactgtgtacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaaagtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgcccacatcaaaccagaggagcttttccagatcagcagggacacacggaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195763 lncRNA downstream 119583 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 144055 13107812 ~ 13108067 (-) True G155400
TU195743 lncRNA downstream 144629 13079485 ~ 13107493 (-) True G155391
TU195718 lncRNA downstream 213570 13036459 ~ 13038552 (-) False AMCG00005966
TU195738 lncRNA downstream 218714 13028204 ~ 13033408 (-) True G155390
TU195788 lncRNA upstream 14474 13266963 ~ 13267162 (-) True G155429
TU195790 lncRNA upstream 21151 13273640 ~ 13274693 (-) True G155431
TU195881 lncRNA upstream 211966 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 214481 13466970 ~ 13484019 (-) True G155503
TU195898 lncRNA upstream 316090 13568579 ~ 13578799 (-) False AMCG00005977
AMCG00005944 mRNA downstream 1434 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005943 mRNA downstream 7335 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005947 mRNA downstream 70586 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005948 mRNA downstream 81102 13169077 ~ 13171020 (-) True AMCG00005948
AMCG00005946 mRNA downstream 95804 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005945 mRNA upstream 26814 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005924 mRNA upstream 132694 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005952 mRNA upstream 141169 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005953 mRNA upstream 209727 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005976 mRNA upstream 278387 13530876 ~ 13533884 (-) True AMCG00005976
TU195614 other downstream 397319 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 579664 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1897489 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1913008 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1927055 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 915601 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1084402 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1256744 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1427308 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1530142 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile