RNA id: TU195790


Basic Information

Item Value
RNA id TU195790
length 1054
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G155431
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13273640 ~ 13274693 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacaatatttcattttattagtaataaaacagtgcatttacatttcctttttttcctttttcaatatttataaacCTGTCTCCACATTCTTCAGGGTGAAATCTTTAAGATCACATAGAGATTTAACACATACATGTTCCTCTTTTCCAATGGCATTGTTTTCCACAAAGAAATCCGCGGGAGCCTTTTTCGTAAACACAGggatgatacatttaaaaaagcaggaATGTGGATGTCCTATTCATGTCAGGAGCAGCAAACCCAGAGCTCCTGTGTGCATTagatattgtatataaaaaaaagacattccattcaaaataaatacacactccTACCTGTACGCCTCACTCGTATGATGCCATGTCTAAAGGTTATTAAATAAAcgcaatacaaatacaatccaAACGGTTTTCCATAGGCTACGCAGTCCACGGCTTTGGTTACAGTTGGTCACCCCACACCCACACAGCGTTGGCATCAACTGGCACGAGCATTTGACACCGCTAAGGAAATCTGGCGGGAAAATGACTTTTGACTTCTTTCTTTTCTCGAAGTATATGCATAGATTTTTATTCAACAGGCTACAGTTTGTGTCCCCCTTTTCCCAGAGCTAATATTCCTGAAGGgcatgttttcttgtgtgttgttgttggctGGTTTTCCAATCATTATTATGAGAGATCAGCTAATAAAGTCAACAGACACAACATGTTACACTAGTCCAACACATTAAATCAACCGTTTGGGGTAAATAAGAGTTCAGATTAAACCAAATCCAGAAGACAGTGGTCGTATGAAATCACTGTAGACCGTGGATGGTCTGTATATGATCTCAGTGAGTGGGCTCCCTTGTGGCAATGGCTGATGGGAAAAGCTCTAATTCTTTCACTTCCTCCAAACCCTTCTGagaaaacacatgtatttctgTTGGTCTATTTTGAGACACAGATATCAGAAATGTAAGCTGTACATTGCATAGACACATTAGGgaagttttaaaaaacaaacagatacatttattaAGACTTCCCCACATATAGCATTTGTTCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195788 lncRNA downstream 6478 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 21151 13252122 ~ 13252489 (-) True G155426
TU195763 lncRNA downstream 141101 13123557 ~ 13132539 (-) True AMCG00005946
TU195753 lncRNA downstream 165573 13107812 ~ 13108067 (-) True G155400
TU195743 lncRNA downstream 166147 13079485 ~ 13107493 (-) True G155391
TU195881 lncRNA upstream 189762 13464455 ~ 13465588 (-) True G155502
TU195883 lncRNA upstream 192277 13466970 ~ 13484019 (-) True G155503
TU195898 lncRNA upstream 293886 13568579 ~ 13578799 (-) False AMCG00005977
TU195906 lncRNA upstream 389371 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 391041 13665734 ~ 13698534 (-) True AMCG00005971
AMCG00005944 mRNA downstream 22952 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005943 mRNA downstream 28853 13240482 ~ 13244787 (-) True AMCG00005943
AMCG00005947 mRNA downstream 92104 13172886 ~ 13181536 (-) True AMCG00005947
AMCG00005948 mRNA downstream 102620 13169077 ~ 13171020 (-) True AMCG00005948
AMCG00005946 mRNA downstream 117322 13131727 ~ 13156318 (-) False AMCG00005946
AMCG00005945 mRNA upstream 4610 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005924 mRNA upstream 110490 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005952 mRNA upstream 118965 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005953 mRNA upstream 187523 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005976 mRNA upstream 256183 13530876 ~ 13533884 (-) True AMCG00005976
TU195614 other downstream 418837 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 601182 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 1919007 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 1934526 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 1948573 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 893397 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 1062198 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1234540 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1405104 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1507938 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile