RNA id: TU195883


Basic Information

Item Value
RNA id TU195883
length 265
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G155503
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13466970 ~ 13484019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgttttgtagagaaaaaaaagatatttaatattaaacatttacaacacGCCTTGATGGCGGGACAGAGCTGCCGAGGGCCGGTGATCCCAGGGGTCCGTTCCCAGAGCGATGCTGGCGGTGGCAGGGGGCGGCTCTGGCTTAAACGTACCACTGGAAACCAAACTTTTTGTGCAACAGCTCCTCCTGTGGCCGGAGGTTGTACAGCTCGTCGGAGAGCGGGGTGACCCAGCGGTCAGTGTGGAACACCTTCTCGCCCACCTG

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0098656 anion transmembrane transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195881 lncRNA downstream 1382 13464455 ~ 13465588 (-) True G155502
TU195790 lncRNA downstream 192277 13273640 ~ 13274693 (-) True G155431
TU195788 lncRNA downstream 199808 13266963 ~ 13267162 (-) True G155429
TU195785 lncRNA downstream 214481 13252122 ~ 13252489 (-) True G155426
TU195763 lncRNA downstream 334431 13123557 ~ 13132539 (-) True AMCG00005946
TU195898 lncRNA upstream 84560 13568579 ~ 13578799 (-) False AMCG00005977
TU195906 lncRNA upstream 180045 13664064 ~ 13694102 (-) False AMCG00005971
TU195905 lncRNA upstream 181715 13665734 ~ 13698534 (-) True AMCG00005971
TU195907 lncRNA upstream 191190 13675209 ~ 13677337 (-) True G155521
TU195941 lncRNA upstream 301987 13786006 ~ 13787634 (-) True G155550
AMCG00005953 mRNA downstream 4410 13462216 ~ 13462560 (-) True AMCG00005953
AMCG00005952 mRNA downstream 70286 13393658 ~ 13396684 (-) True AMCG00005952
AMCG00005924 mRNA downstream 79576 13385183 ~ 13387394 (-) True AMCG00005924
AMCG00005945 mRNA downstream 182242 13279303 ~ 13284728 (-) True AMCG00005945
AMCG00005944 mRNA downstream 216282 13247754 ~ 13250688 (-) True AMCG00005944
AMCG00005976 mRNA upstream 46857 13530876 ~ 13533884 (-) True AMCG00005976
AMCG00005978 mRNA upstream 77053 13561072 ~ 13567481 (-) True AMCG00005978
AMCG00005977 mRNA upstream 84448 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00005971 mRNA upstream 185261 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005970 mRNA upstream 230965 13714984 ~ 13718428 (-) True AMCG00005970
TU195614 other downstream 612167 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 794512 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2112337 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2127856 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2141903 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 684071 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 852872 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 1025214 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 1195778 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 1298612 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile