RNA id: TU195941


Basic Information

Item Value
RNA id TU195941
length 1087
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G155550
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13786006 ~ 13787634 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAGGTAAACAAGATGGCGGCAGCCTGACAGCAGCTGCAGTAAAGGGATAAAACCTCTCGTCTTCACGCCGACAACCGACACACGCcagggggaagaaaaaggagaagaaaccCGAGCAGACCCACAGGCTACCTCTCTGCAGTGCGAGCCGGGGATATTAGCGAGAGGAAGTGAGCCATATCGACCTGTCTTTATTAGAGGCTGGATAGCGTACCCGTACTTCTAATTCGCTTCAACTGTACTTGACACCGTGTGTGATGATACCGGACTAGTGCTGCAGTTTGCAGGTCCTGGCGAGAAGAGAGACACTTTGGGGGAAGAAATTGAGCCAGTAACGGCGTTTGGAAATACAGCAGTTAAATAGTAAATAAAGCCAAGGCGGAGCGGGTCCGTTGTCTCTATCGTGTGCAGATATCCAAGTGTGGAGCCAAGACCGTGATTTATAGGAGCCGGCATTAACTCTTTGTTGGTGTGCTGAAAATCTTAAGGACATGAAATCGGGGGGAGACATTGGCGTGCCCTcgtttttaaaatagtttttaagcAATACCAAAGAAGAAAATCCCGTGTTGAGTAAAAACCAAAATAGTATTTGCCACTtgggtggaaaaataaaataaggttgAGGCACTGATGCACACTCCACGGATTAAATGGACGTCTGGTACCGTGAGGTAGAATTTGAACCAAAAACATCAACCAGCACCATCCTCTGCGCTGCTTTCTTGTGGGCTGAGGATACGATCACACCTTGAGATGCCCAGGACTGAAACTGATGGATTGTAATCTGAGGAGTGGACCACAAATCACTTGAACTGAAAAGCTCCctttaataaactgaaattaaacccCATTGCCTCCCAAGGATTTTTCCTGCTCTGGTTCCTTCTCTACGACTCGCATTGTCCGAGCCTTGGGAAGGAGAATAATACACACTATGCTTGAAGTGTAGGCATATCCTTACAGTTGGGTTTCCCTAGAGGAGACTGCCAGACCAGGTGACGGTGGTCCTTCTTTTGTTTGcgattgttttgtttctattttccaCCGGGTACAGTCTTCTTACGTTCCCCCAacccaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195905 lncRNA downstream 87472 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 91904 13664064 ~ 13694102 (-) False AMCG00005971
TU195907 lncRNA downstream 108669 13675209 ~ 13677337 (-) True G155521
TU195898 lncRNA downstream 207207 13568579 ~ 13578799 (-) False AMCG00005977
TU195883 lncRNA downstream 301987 13466970 ~ 13484019 (-) True G155503
TU196001 lncRNA upstream 89089 13876723 ~ 13881170 (-) True G155591
TU196003 lncRNA upstream 95957 13883591 ~ 13884628 (-) True G155593
TU196072 lncRNA upstream 301702 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 378545 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 512841 14300475 ~ 14305697 (-) True G155701
AMCG00005972 mRNA downstream 121 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00005969 mRNA downstream 24576 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005970 mRNA downstream 67578 13714984 ~ 13718428 (-) True AMCG00005970
AMCG00005971 mRNA downstream 92614 13669280 ~ 13693392 (-) False AMCG00005971
AMCG00005977 mRNA downstream 202655 13568467 ~ 13583351 (-) True AMCG00005977
AMCG00006003 mRNA upstream 5728 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00006005 mRNA upstream 26558 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006004 mRNA upstream 43283 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00005983 mRNA upstream 129701 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00005982 mRNA upstream 139276 13926910 ~ 13932804 (-) True AMCG00005982
TU195614 other downstream 931203 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1113548 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2431373 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2446892 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2460939 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 380456 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 549257 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 721599 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 892163 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 994997 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile