RNA id: TU196003


Basic Information

Item Value
RNA id TU196003
length 1038
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G155593
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13883591 ~ 13884628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatggggatgtttctgtTTGGTTGTTTCATTCAGAAATAAAGTCAACGACAACAAAATTACACATGACATCGTTTATCATTTACAATGTGGCCACAGTGGCACCCTACTCAGGTTTTTAGTCACAATTCACCACTATAATTAACTATTACTATTGTGAACTATTATATTGTTagacaattttaataaaaaaaaaaaaatacgctCATACAAATCAAGGCAATACTTCCATGTTCTtgataaactaaaaacagacaTTGACTGTTCACAACAAGCCATGTCAGCTTTTCCATACAGTTAACGCTAACCTACATACCTGTTCGATATGAAAAGTCTTAAACATGCCTTTCAAAACAGTAGACAAAGGATGCATCAGCGAAAGTCTAAGCATCGATTAAAATTCCCAACTCTACTCTGCCTACCGAGAGATGCTGGATGGTCTTATGTTGTCTCAAGCTGTAGTACGTTTCAAAAGCTTCTTCTAGAGGATTTGTATTGAGGTTCCACAAGCCATTTCCTGTCCAGGCTCCAAAAATGGCTACCCCCCCATAATCTAGGACTGAGTTTCATTCCACATTTTTATCTGCTTGTTTGTTCACTCAATCCAACATCCGTCGACACAGCAATACTGAACTCAGTCGAGGGAGTCTGCTTGTAAAAAGGTATCTCTGAATGGATTCATGGTGGTGCTTATTAACCAGTAGGTTTTAGCTGTGTCCCCAAGGCCAGGTTTGGTACCTGTGGGTCTCTGATGTGATGGACAGATCAGTGGCAGGAGTGGACGCTTGGAAAAAGGGGTGCGATATCTAGGTGGTCCGCAGTCACATGATGGCACACTTCTCTTCAGCGGCTAGTTTGATCTCCGTCATGGTGACTTGGGCTTTGTTCTTGAGGACATCAAAGTCCATGTTCTGAATCTTGCCCAGCAGAGTGTCGctcgcctcctcctcctcctcgtcctcttcCACCATCTTGGCCAGGTCCTCAGGAAGGTCCACATCCCCCCCAACCATCTGGATCTGAGCATCATCCTTCTCGc

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196001 lncRNA downstream 2421 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 95957 13786006 ~ 13787634 (-) True G155550
TU195905 lncRNA downstream 185057 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 189489 13664064 ~ 13694102 (-) False AMCG00005971
TU195907 lncRNA downstream 206254 13675209 ~ 13677337 (-) True G155521
TU196072 lncRNA upstream 204708 14089336 ~ 14092457 (-) True G155652
TU196075 lncRNA upstream 281551 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 415847 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 415847 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 434351 14318979 ~ 14323114 (-) True G155703
AMCG00006004 mRNA downstream 41629 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 56005 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006003 mRNA downstream 82761 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00005972 mRNA downstream 97706 13772482 ~ 13785885 (-) True AMCG00005972
AMCG00005969 mRNA downstream 122161 13751988 ~ 13761430 (-) True AMCG00005969
AMCG00005983 mRNA upstream 32707 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00005982 mRNA upstream 42282 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005999 mRNA upstream 208272 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005997 mRNA upstream 274503 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005998 mRNA upstream 289217 14173845 ~ 14179120 (-) True AMCG00005998
TU195614 other downstream 1028788 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1211133 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2528958 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2544477 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2558524 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 283462 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 452263 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 624605 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 795169 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 898003 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile