RNA id: TU196072


Basic Information

Item Value
RNA id TU196072
length 2069
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G155652
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14089336 ~ 14092457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGAGGAAGTGTGAGGACTGCTACAACTTTTACTTGTTTGGGGTTTTTCTTCAAAGAATCGAATGTGTTGTAGTCATTGAGGTACGTCGAAAAAGAGACGTTTTTCTTTGCGTGCGAAGCTGGGATGGACTGGTTTAGTTTTGCTGCTTGGCGACTACGCTGTGGTGGAACCAAGCCATGGATTGGGGTTATCTAGTTTGTCCCATACTTTGAAAGCCAAGAAAACAACGAAAAACCTTCTAAATTGCAACATGAATagagaaaaatattgttttaaaaaaaaaaaattaaacggATTTAATTATTCTGACATGCTCTGAATATCTTTCACAGATGTGCAGCTACTGAAATCTCAGCGTacccttttcagttttttgtcgATGCATAGCCTGCTGTTCATTGGCATCTCATTGGCTCGACACGCACGCATCTGGGGTTGGTATCGCATCCTCGACAGTGCAGTGCAGCGCGCACAGGACTCTGGACAACAATCTGACAGGAGTTTCCTCTGATTGGATGAGATTACAGATACAAAGATAGATCATTTTTAAGCAAATAAATTTTAATCTTGGTATCTAAATACTGGAATTTTGTTTCTGGGAGCGGGAAGGGAAAAATCACACAGCATTTAGAGACACCgttcattttaaaacctcttGCCTTCCTCGTTGGTACTAGTTAGtcagataattatataataacgTCTCATTTCTGTGGGGGTGTTCCATGTTTTAATATTGAGTATAATACCTGTAGCTAGTTTCCTTTCACTTTGGCCCTTATTATAGGTAGTTACTGGAAAAATGAGCTTTTAAAGTCATcacagtaaaagaaaaataaatacactgtgtGCGCCCTTTTATTACACCTGTGAAATCTTCATTCATTGTCATATAATTTTCCTAGCAGCGTCCAGTTTGTCTATCCAAATCCAAAGTCTGTAAAGGACTGAGCTGCCGGGTcacttgaatttgtattttttttggtttatttcttAGGTACAAGTAGGCGTTGAGTTGAGTTGGCAtttcctctcccccccccccgaccTCTGACAATCTTTCAACCATTTGGTTACTTACCAGTTTCCTTTTGGTCTCTGTCTTTTAAAACAGGTTATCTTTTTCAGGCTGCTATACGTAATCGACTTTTGCTCTTTCTCCACTCACCGATGTATTTCTTGGTGATTTTGTGGTGTTTTAATCACAAGGAACCACTTACGAATACCAGCACACTCCATGGTgcgttttgttgtgtgttttttatgtgtttttgtgtgtgtgtgtgtgtcagtattgCATTGCAGTCTGTGAGATCCTCCTCGCATTGCATATCCGATCACTGTCCTGATcgacatttataaaacattgtcacATAAACTGGAAAACGTCACTGTTGCTCTCCAAATGCAAGTCTTTCATCTTTTCtctgcatttcacttttctctttttaatatgtatttaaatgggtTTTGATTTCAGTTCTCACAAAACGCCTCTGAACACTGCTGGGATTTTCCCTGTCATTACAAGTTTTTGATTCCTCCCCCCTCTCCtctatagtacagtacagcagtctTTTTTCACTGCTGGTGTTCACAatcattgatttttatttatttcttgtccactttgttttgttttttaagtcctgttttaacagaaactgaaaaagtTTTGTCACTGCCAAACGAATTCTGCTtcacttaaaacaataaaaatatcattatatattatttttttcatcctgATGGGGGTTTGACAGCATTTTTAATCTAAAGCCTGTAGCATTCCTACCCTCCCTCCTGACCTGCCTTTGACTTTTTCCTCTCGGTAGATAAGCGAACAAATGGAAAAGCCAAACTGTCATAGTGAAAATGCATTAAGGTGTATGCAAATTATGTACATTACGGTCTGTTATATTTGtcctatataaaaaaaaaaaagataataagaACTAACTTAAAACATTTACGGTTGAGATAAAAGGCTAGAATTTCTTTGGAATTTTAATCCTCTGTACATggttattgtttaatataattaaagttaAGGTAACATTCCAGGTA

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196003 lncRNA downstream 204708 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 208166 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 301702 13786006 ~ 13787634 (-) True G155550
TU195905 lncRNA downstream 390802 13665734 ~ 13698534 (-) True AMCG00005971
TU195906 lncRNA downstream 395234 13664064 ~ 13694102 (-) False AMCG00005971
TU196075 lncRNA upstream 73722 14166179 ~ 14166404 (-) True G155655
TU196134 lncRNA upstream 208018 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA upstream 208018 14300475 ~ 14305697 (-) False G155701
TU196137 lncRNA upstream 226522 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 277304 14369761 ~ 14370182 (-) True G155717
AMCG00005982 mRNA downstream 156532 13926910 ~ 13932804 (-) True AMCG00005982
AMCG00005983 mRNA downstream 164474 13917335 ~ 13924862 (-) True AMCG00005983
AMCG00006004 mRNA downstream 247374 13830917 ~ 13841962 (-) True AMCG00006004
AMCG00006005 mRNA downstream 261750 13814192 ~ 13827586 (-) True AMCG00006005
AMCG00006003 mRNA downstream 288506 13793362 ~ 13800830 (-) True AMCG00006003
AMCG00005999 mRNA upstream 443 14092900 ~ 14136611 (-) True AMCG00005999
AMCG00005997 mRNA upstream 66674 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00005998 mRNA upstream 81388 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005996 mRNA upstream 94791 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00006012 mRNA upstream 157334 14249791 ~ 14256738 (-) True AMCG00006012
TU195614 other downstream 1234533 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1416878 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2734703 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2750222 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 2764269 11320737 ~ 11325067 (-) False AMCG00005876
TU196074 other upstream 75633 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 244434 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 416776 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 587340 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 690174 14782631 ~ 14784006 (-) False AMCG00006043

Expression Profile