RNA id: TU196134


Basic Information

Item Value
RNA id TU196134
length 564
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G155701
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14300475 ~ 14305697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGTCAGTGGCCTTCTTCTCAGACAGTTCCAGTTTCTCCTGGGCATCTTTCAATGCTTCAGAGTATTTGTCCAGCTCGTCCTCAGTACTTTTCAGCTTCTTCTGCAAGCCAATCAGCTCATCTTCCAGCCTGCTTGCACTTGTCCTCCGCAGCTTTCTTGTCGGACTCTGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCTTCCATTTTGGCGTTTGTTTTGGGGGTCTGGGGTTGCTcaaggaaatgaagaaaaaccaaaaaccaaaacaccaaaaaaaaaaagaaatcaaattaaatcaaagcagCTCAGTCGACAACAAGAAGAAATCAGGAGAAAAAGAGGACCGGAGAGCCTTCAATGGTAATGCTGGAGCCCCACacaaacagagggagagagagagagagagagagagtaagggAGAGAACACCAGGGATACAGACTGAGACCCAGTGCTGCCTAGATAGCTTTAAACTCCTACAAACACCCGACTCTAGGTTTTGGAGAGAGCCGTGGTCCCCGGTGAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196075 lncRNA downstream 134071 14166179 ~ 14166404 (-) True G155655
TU196072 lncRNA downstream 208018 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 415847 13883591 ~ 13884628 (-) True G155593
TU196001 lncRNA downstream 419305 13876723 ~ 13881170 (-) True G155591
TU195941 lncRNA downstream 512841 13786006 ~ 13787634 (-) True G155550
TU196137 lncRNA upstream 13282 14318979 ~ 14323114 (-) True G155703
TU196154 lncRNA upstream 64064 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 116807 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 183593 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 263865 14569562 ~ 14569836 (-) True G155783
AMCG00006014 mRNA downstream 28466 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 43737 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00005996 mRNA downstream 101561 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00005998 mRNA downstream 121355 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005997 mRNA downstream 128910 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00006013 mRNA upstream 31244 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006015 mRNA upstream 64712 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006028 mRNA upstream 77973 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006029 mRNA upstream 87757 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006027 mRNA upstream 136213 14441910 ~ 14445493 (-) True AMCG00006027
TU196074 other downstream 128868 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1445672 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1628017 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2945842 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2961361 11336774 ~ 11339114 (-) False AMCG00005877
TU196147 other upstream 31194 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 203536 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 374100 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 476934 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1127735 15433432 ~ 15436866 (-) True G156088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU380669 True 21685 lncRNA 0.37 4 CI01000115 2591179 ~ 2702799 (-)
striped catfish (Pangasianodon hypophthalmus) TU380669 True 7701 TUCP 0.40 2 NC_047615.1 16357574 ~ 16367004 (-)
tiger barb (Puntius tetrazona) TU282026 True 591 TUCP 0.53 4 NW_025048442.1 31556 ~ 42751 (+)