RNA id: TU196137


Basic Information

Item Value
RNA id TU196137
length 3027
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G155703
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14318979 ~ 14323114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGGGAGCCGATTGATGTGGTCAGACAATCACCAACTCACAAACACCCCCGATTAGATCTAACAGGGGTATAGTGGGTCTGGTAAACTGATGGATCGAATGTGGAATTCCAAAAATGGTAAAAGAAGCCAAAGCAGACATCCAATAATTCTGTACTTACTTTTTCCAATATGGTGGATACAGGTCTATAAATAAGACTTAAATACTTCcctgtcacacaaacacattccaCTGTTGGATTTGAGCAGATTCAGGTCATTTAGTTAACTGATAATTAACTATACCTTGAATGGTTTGGGTTTAATCTTTGACTGTCTTTCCATTACAGggaatgaacaaaaaaaaagttatcaaatattcatggatttaaaattaaacctatgagttcaaaacatttaaaaaaaggtgaaCTTTGCAGTCACATGAGTGTCCAAATGCTCTTTTTTTGGGGCCTAATGAAAGGACGTCATGAGGTAGCACACTGGAGTGGATATGAAGCAGAAGGAAGGAGGAAATGAATGGGTATTTTGTAGGACAGAAAGAACTTTATTAGAGCTTCATTTTTACAGAAAGGGTCTCGCAGGCAGACAAGTCAGAAGAAAAGGCATGGTAGTGAATGGCCAGTGTTTGAAGATGGAAGAGGGAAGGCTTTTTTGAAAAGGGACAGGCGTTCTGAATAGGACAGGCTGCCGTGGAGNNNNNNNNNNAGGTCATGTCATTGAGGGCATGGTCCAGCTCCTCGCTGATGGCCTTGTACTTCAGCTTCTGAGCATACAGTTCATCTGGAGGTCAAAGGGCAGGAGGAGCAGAGGAACAGCAgcaacagaagaagaagaggggCAGCGATGAGCGATGGAAGAAAGGGAAGGAATGACAAAGACAAGGaatggacacagagagagagaaaaaaaaggaaaaacaaaaggtcaGAGAGAGCAATAAAAGTTACAAGGTAAACTACACACTCAACTCCATCAGAATAACCGATACTCCAGGAGGTTTGATCCGATTACTAAAAAGTGCAACTGGTAGCTAAGATTGGCAGTTGACTCTGGAATGGGACTGAATACTGATTTTAGAAACTGGAGAGGTTTACTTTACTAAAGGCAAGACCATTTCCAGTCATGCCCAGATGCTGGTCTCATTAAAACTGAAGTCCTGCACATTTCGATCGTTAAATAAGAATTTCAATGATGTGTGAAAGTACATTTTGCAGTCTATCAAATGTCAGTTAAGATCCTCGACTTCTaggcagattaaaaaaaaaaagtttctttaAAATCGGCTATATTAAAAGTACTTGCTTTCCCCAGTCGATTCTGCCCTCGATTTcgaatttcaaaattaaaaatcaagaGTCTCAGAGTGTTTCTAATGGAATAGGTTCTGCGCAGGAATTTACTGCTGTACATTGATCACACACACTAGTATTAATTGGTGTGATCTGTAACCTCCCCAACCCATCCCCTGTACTTCAGTTCCCCTGGCATGATAATGAAAAGACCATTCTGCAGCCCTGCTCCTTTCACATAGTAGTTTACTCGGGGGATACAGTGAGACAGCAGgcttattaaaaaagaaaagaaaaaaagaaatccacaaGTTCAGCAGGAggatgcccccccacccctctttcTTTAGGAAATTCATTTCCAGCCATTAAACCCAAGTTGGGTTCCATCTCAGGTAGAGCAAACGCTACAGAATAGGAGACAGTTGCTGCAATTCAAGGCAAGTTTCAATTGTTTatgatcaataaaaacaatctggaAACAAAACCCTTCTACACCTATAGCTAGATCCAAACGCCAGATGCATGATTAAGCCCCACATGGTCAGAATTTACTGAATTGGATTTACTCCCAGAAGGACCAAACTCACAAATACTGGTTTGAAAAATGCCAGTAAAGTGTACTTCTTGGTTTACTGCCAATGCCTGAATTGTAaccataaaaatgtatacttttatgGACAAAAACATATCGATTTGCAAGTGCTAGCATAAATCTGAGTGTCAGCATCCACAAAATACGCAGATTGGTTTCTGTCAAATTACTAAATGTACAACAAAAAGTAACACTAATTATGacaataatattgtattgtaaccaACCAGGAGCCAAAACTAATGTATTTTCAGATAAAAAGAACACTTGTGGCTTAAATACTGTTAACTATGGAAATaaccttttaataaaataaattaagtagtGCGAGACCTCAAAGTCACTTCGGAGAAGCCAATGTTTGCTATGGCCTAGTGTCGAACATCCAGCATTTCTCTATAGTAACAGCAGACAAACCCTGctgaatacagaaaaatatgGTGATCCTACCTTCCAGGTCATCGATGGTTTTTTCCAGTTTGGCCACTGACCTCTCTGCAAACTCAGCACGGGTCTCCCTCTTTCAGCTTGTCACTGAGAACCTTGATTTCCTCTTCATACTTGTCCTCCTTTTCGGAGTATTCTCAGACTGGGCTTCTAGAGACTTGAGGTTGTTGGTGACGTTTTTCAATTCTTCTTCCAGGTCACTACATTTACTGTGAATACATGCGGTCAGACAGGTTTACAACATTGGAGAGAAAGGTTTTTGGGAAGGAAAGCTGCATGCACATCTGAGTCCTAGTAAACCTTATCTCCAGTTCAATTAAAAACCAAAGGAGCtctattttttgtaaataaaagaaaaatccattttgacacatttcagaaatgcataACAACAACTTACAGCTCCGAAACCTCAGCTCGCTCCTCAGCTCTCTCCAGCTCGCCCTCAAGAATCACCAGCTTACGCCACCTCCTCGTATTTGCGGTCGGCCTCTTCAGCGATGTGCTTGGCCTCCTTCAGCTGCATCTCCTGGATTTCCATCTTCTCTTCGTCCTTCATCGCCCGGTTCTCAATCACCTTCTCAGCCTCCTCCAGTTTCAGCAGGGCGGTGGCGAGCCTCTCCTGGGCACGGTCCAACTCCTCTTCCACCAGCTGGATGCGGCGGTTCAGCCCAGCAACATCTCCCTCTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196134 lncRNA downstream 13282 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 13282 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 152575 14166179 ~ 14166404 (-) True G155655
TU196072 lncRNA downstream 226522 14089336 ~ 14092457 (-) True G155652
TU196003 lncRNA downstream 434351 13883591 ~ 13884628 (-) True G155593
TU196154 lncRNA upstream 46647 14369761 ~ 14370182 (-) True G155717
TU196199 lncRNA upstream 99390 14422504 ~ 14424746 (-) True G155754
TU196218 lncRNA upstream 166176 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 246448 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 657270 14980384 ~ 14981621 (-) True G155899
AMCG00006014 mRNA downstream 46970 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006012 mRNA downstream 62241 14249791 ~ 14256738 (-) True AMCG00006012
AMCG00005996 mRNA downstream 120065 14187248 ~ 14198914 (-) True AMCG00005996
AMCG00005998 mRNA downstream 139859 14173845 ~ 14179120 (-) True AMCG00005998
AMCG00005997 mRNA downstream 147414 14159131 ~ 14171565 (-) True AMCG00005997
AMCG00006013 mRNA upstream 13827 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006015 mRNA upstream 47295 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006028 mRNA upstream 60556 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006029 mRNA upstream 70340 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006027 mRNA upstream 118796 14441910 ~ 14445493 (-) True AMCG00006027
TU196074 other downstream 147372 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1464176 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1646521 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 2964346 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 2979865 11336774 ~ 11339114 (-) False AMCG00005877
TU196147 other upstream 13777 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 186119 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 356683 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 459517 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1110318 15433432 ~ 15436866 (-) True G156088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU479360 False 2344 lncRNA 0.49 6 NC_048569.1 60368429 ~ 60393194 (-)