RNA id: TU196199


Basic Information

Item Value
RNA id TU196199
length 1995
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G155754
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14422504 ~ 14424746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAGGGTAATTcacaaaagttaattttattttatatgtatacaaaatatattttgccacagaaaagataaaaaaagcttccaaaaacaaaagctgcacCATGGTGGCTCAATAATAGCAGGCACTTGAAATCATTCACAAGCCATTCATCGAGCTGCAGTGGTTCCAATTACAATACGTCTCACACAAACATTCTTCCAAAACATCACACACTGTTTGAAATGACACAAGTTCAATAGTTGTATATCACAGACATTCATTTCAAAGAGTAGCAATAAACTCATAACAGGTTTTTCACATTCTGtccatttacattgttttttgctttgtcagTACAAGATTGCAAATAGTAAtagtctatatatttatttacatacagatTTTAATGTAGCAAGTGCGCTTAAACCCATCTGCCCCAACAACAATTGATTATAGATTAGCTGCCAACTTTTAAAAGCTTCCAATAAAGCACAGTAAATCCATAAAATGTACTTGCAGTACTTGTAAGCTATTCATACATTCAAGATGAGTATTGTCCTGCGTGTGTGTGATTAATTTACTATTTCCTTATTACTgatttatattactttatatCACAAGCAAAGACATTTTAAGATTGATTTCCAGAGATTTAAGAATTGGCGTGAATGCTGGACAAATGGATTTATTAAGTGGCAATCCATACATAATCAGCAACTTTATTGACCAGTTATACTTGGTCCGATAAACCAATAAAAGTACTTTGGTGTTGGGTGATAATGCAATATCAGACTCACTGGATCAATATAAATTACGTACTAGTTCAACACCATGGAAAATGGAGCATTGCtatccaaccctggtcctgctcAGGTATAATGAATGTACAGTTTAGTAAAGATGGCAATCATTTTGACTAAAGCAGTAATGGATTTGATTttggaatatttgtttttcataactaGCAGCCCATAATCACGGGTCTAACAGGTCTAAATCTGCAGGAGTACTGAAAACTGCATTAACCCCTTAAAGCACCCACCAGAGTTCAGTCTGTTTCCCATTTAAATTggacacaaacaaagaaaataagaaaatagatATTTGAAAACTAATATACACTTCATTCAAGCTGAAATAGTTTCACATTCAGGATACATGTGGACAAATGCAAGCATACTTTTTCTCCAAAGCTTGGAAAGACCCTTTTTCAGATATAGATGAATATATGTTTAGTGTgtatgcaacaaaacaaaattgtatgCAAGATGTATCTGCCCTTCTAGACAAGGACCTTGTATGATTCAGATGCTTTGTAATTGTCTGGATTATCCATTGTGCTGGGCTGGTTACCTCAGCATGGCGGATCGCTGAGTGGCGACCAGGTGTATTGACTCTGGAGAAGAAGTTCAAAGTGGGTCAGTTACTCTCAGTACAATCACTATTGCTGCCAGGAAACATTGCTGAAATAATACTTGGAGAAAGGGACCATACAGGCTCCTACTTCCGCCATTCTATAAGTTTCCGGATTTGAcctTTTTTCTCCTTATTTGCCCTCTTAAGTCgattaattaacatatttgtCCAATGGATTTTGGGGTCTGCACAGAAAACCTTTCCATTATTCCGGATAAACCTGTTAAAGATACAAGAAAAGAGAAGATTATATGGAATCATGCTGTTCCCAATTCAgtcttgtttttctattttgcaTATGGCAACCAGAGTTTCAGGTTTCATAAACTTGTTTCCCTGATGCAAACTCAAGAAGCCTATTTGTTCATTTTGGAGAAAGAGACCCTTTTCAAATTGCCATGAAAACCCAATATTGAAAGAtcatatacatttcattaatttaaatgtgagcAACTGTGGCTTCTCTTTGGATACATACACAATGGCTCGAATATTGCAGGACCCATCCGTTTCCTGTATACGGTAAGCAGTCACAGTCTTGCGGAGGTGTCTGGGCACATTCCTTACGTATTTCAGACAGCAATTCTCATAGGAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196154 lncRNA downstream 52322 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 99390 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 116807 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 116807 14300475 ~ 14305697 (-) False G155701
TU196075 lncRNA downstream 256100 14166179 ~ 14166404 (-) True G155655
TU196218 lncRNA upstream 64544 14489290 ~ 14491929 (-) True G155768
TU196235 lncRNA upstream 144816 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 555638 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 556357 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 577664 15002410 ~ 15004191 (-) False AMCG00006102
AMCG00006029 mRNA downstream 21331 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006028 mRNA downstream 31396 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006015 mRNA downstream 47561 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006013 mRNA downstream 80901 14336941 ~ 14341603 (-) False AMCG00006013
AMCG00006014 mRNA downstream 150495 14264388 ~ 14272009 (-) True AMCG00006014
AMCG00006027 mRNA upstream 17164 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006026 mRNA upstream 28272 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006018 mRNA upstream 67259 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006020 mRNA upstream 121434 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006019 mRNA upstream 122198 14546944 ~ 14549687 (-) True AMCG00006019
TU196147 other downstream 81841 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 250897 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1567701 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1750046 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3067871 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 84487 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 255051 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 357885 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 1008686 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 1064656 15489402 ~ 15491642 (-) False G156088

Expression Profile