RNA id: TU196218


Basic Information

Item Value
RNA id TU196218
length 2640
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G155768
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14489290 ~ 14491929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taagatttcAGGACAGGAATCCATTATGtcagtgtttcccaacctttTAATGCTGAAATCTCACCTACTTAACATAACATCAGATGCATTCTTCAcacaactttaaaacaaatattacgcTCTGTTAGAAACCTGAGCATGTTCTGTTGCACAGTTGTGTAGTTCTGCtctgcattgtttatttgtttcatagTTTATTATCCTCAAATCTGACATTCCAACACATGTACGTTCATGGTTGAAGGCACTAATGTAGCATGACACACTGGTTGGCAAACTCATATTGGGTAAATAGTTCTATCCATGTGGACCCACCTCTAATGCATTCATAGTTATCATTCCTGAAgctgatttatattttgatgATGTACTTATTGTCAAATTAGACCATTTTAATTGGCCATCACATTTCCACAACAATAAGCAGTGCTAACATagaataaattattgatttaaattcattccactgaatataatattttctaGTGTTAAAATACTTTGTTCTAAACTCATTAGGAGAGcggttgtgtttttcttaagcTAAACTGCCACCTAGTGGGGCATTTCAAATCAATCCAGTTGAGCAGCAGACTGGTTCACTACATGCACTTATACAAAACTAGAAATGGTTTTGACAATCTTGaagtacaatatttaattatatgaaagTACTTTCCAATTTGTGTAACAGCTGAATCTATTTCATGTCATTTCGGTACCACAGCTGTATTATAATGAATTCAGTGATGTTTTAGTTTCAGCTAAGGAGCTACGGTTGTCCAACAAGAAGCTGAATGTTGCCTTATTATTGAAAGTGTTTAGTGACCTAGAGTGTAGTATACGCCTTACTGCCCTCAAAATGCCAAGGTACTGACTGTGGTTTTGCTGTGGGGAATGGATCACTCCACAATTTGAAAACCATGGtccttttaattgtttgaatttTCTTGCTGTTTTCTTTGGATGTTAACAGTATGGTGCAGTTCTGATGGAGCCTGTTGTTTTGATGTGAAATGCATGGACAGACAGTGacagtttttatattattctttgtttttgttctacaGGCTGCCATTTTTGTGTACTTTTGCTATTAATTTTCAGATGAAAATGTGGgagattttatgtttatttacactataatatttgtaaatacgTATTGCATACTGTGTATAGAGTAGTTTGTACGACAATTGAAAGTAGATGCCCtgtttttgattgatttcccccAGTTTAATGTGAGATTGATACCAGTACTTCATACTGCCATTGAAACCTCAGATTCTCACTTTTAGTGGAGACTTTTATACTGCATTTACACTGCAAGGTATACACTTCTTATAAcctttctgtgttgtgtttacaCTGCTGACGTTTTAGGGACCACCTGCACGCATACCTCCTAATTAGAATGCGTGCTGCGTCATGACATAATCACCGCCCATGCGCAATGAGTTTTCTCTTCCCCAAAGACGGAAGTAAACAAACATATCTGCCTTGTTAGCTTGCAGTTGTATGGTAGGGGTTAATGTGAGTATTCATTACAATTACTCGTGATCAAAGTAGAAATAAAGCAACCGAATGTctgaatataaagaaataaagcagcTGAATGTCATTTTTGGGTTATTGTGTAACATCACAAACGAAAGCggaaaagaaggagaaaaaggaaaacaaacactaacgAAGGTGTGCAATGTGCCATAAACTCCTCAATTACGTGATGTTTAATTAATACGAGAACAAGAAGCGGCCGCGCCCATACAGAAACACGTGGTTCAAGTTTGAAATTGAATCCActtatttattacattgtaaCTTACTTATGCCTGGAGATCAAAtacattaactttatttttattaaagtccAGTGGTGCTCAGCGAAACGTGATCAAGGACATATCCTTATGTCTTTGTTCAAGgctatttacaataaataaagcagtgcCATTAATCCTCACCAAATACAACAATGAATGGTTTGAGAAATGTAATAGATTAATTGCACGTTGTGCGTGAACCGTCCCCTTACTTACGTAGGCAGGACGTTTTTAAGCCTTCTCAGGACCACCTCTTCAGCAGGCcgtttttaattgtgattttgaGATGCTTTGCACAGTATTTCCAAAATAAGGGTGCATTATTCGACAAGCTACTGTGTGAAATCATATTACTTCCACATCCATTCATATATAAATTTTGAATAACTGCTTTATCCTCTATATGGCCATAGTGAACAGGACCCTGACAGGTACACCCTGAATGGCAATATAATATAGTTTGGACTCctatttaaaagcacacagtATTTGATTTCACTTAGTCCTCATAGTTCCAATGAAATACACATGTTTATTGATCTATATATAGTTATCtgatattttcagattttgcccttcatttgaaatgtagtaattgaaagaaatactttttataatgttcaatgtatgtttttcctAAAAATGTCTGACAGTTcttattgtttgtgttgtttatttgtttttattcattgcTAAAGctaataacattttgtaatttaattctcAGTTGTTTATGGGGGCCAAATGGTGCTTTATTGTAGTTTTCAGTGCCAATATTTTGGATGTAAGTATGGAAGATTGTTTTAGCAAATAAATG

Function

GO: NA

KEGG:

id description
ko04510 Focal adhesion
ko04260 Cardiac muscle contraction
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196199 lncRNA downstream 64544 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 119108 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 166176 14318979 ~ 14323114 (-) True G155703
TU196134 lncRNA downstream 183593 14300475 ~ 14305697 (-) True G155701
TU196135 lncRNA downstream 183593 14300475 ~ 14305697 (-) False G155701
TU196235 lncRNA upstream 77633 14569562 ~ 14569836 (-) True G155783
TU196367 lncRNA upstream 488455 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA upstream 489174 14981103 ~ 14981621 (-) False G155899
TU196378 lncRNA upstream 510481 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 608380 15100309 ~ 15105533 (-) True G155957
AMCG00006026 mRNA downstream 30949 14453018 ~ 14458341 (-) True AMCG00006026
AMCG00006027 mRNA downstream 43797 14441910 ~ 14445493 (-) True AMCG00006027
AMCG00006029 mRNA downstream 88117 14393454 ~ 14401173 (-) True AMCG00006029
AMCG00006028 mRNA downstream 98182 14383670 ~ 14391108 (-) True AMCG00006028
AMCG00006015 mRNA downstream 114347 14370409 ~ 14374943 (-) True AMCG00006015
AMCG00006018 mRNA upstream 76 14492005 ~ 14507388 (-) True AMCG00006018
AMCG00006020 mRNA upstream 54251 14546180 ~ 14546493 (-) True AMCG00006020
AMCG00006019 mRNA upstream 55015 14546944 ~ 14549687 (-) True AMCG00006019
AMCG00006035 mRNA upstream 97442 14589371 ~ 14593370 (-) True AMCG00006035
AMCG00006039 mRNA upstream 155660 14647589 ~ 14651753 (-) True AMCG00006039
TU196147 other downstream 148627 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 317683 14168090 ~ 14171607 (-) False AMCG00005997
TU195614 other downstream 1634487 12843778 ~ 12854803 (-) False AMCG00006063
TU195574 other downstream 1816832 12671652 ~ 12672458 (-) False AMCG00005989
TU195020 other downstream 3134657 11349245 ~ 11354633 (-) False AMCG00005879
TU196220 other upstream 17304 14509233 ~ 14509614 (-) True G155770
TU196273 other upstream 187868 14679797 ~ 14682961 (-) True AMCG00006037
TU196327 other upstream 290702 14782631 ~ 14784006 (-) False AMCG00006043
TU196602 other upstream 941503 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 997473 15489402 ~ 15491642 (-) False G156088

Expression Profile