RNA id: TU196365



Basic Information


Item Value
RNA id TU196365
length 520
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G155898
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14981101 ~ 14981620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACTCAACCagatttcaattttattttccaccaGCACCCAAAAAACCGACTACATACATTCCCAGCACACTTACGCACCAAGCGGCTTTCCTCACACACGATTGGCAGATCATAAACACTACTGATGTGCAATAATTAAGCCCGCACTTGTGCCACGCTGGGTCACGAACAGATTGTTATCAGACCGAAAACAGAGATATCTGAACTCCAGGGATCGCTCCTCTGGCTTGCAAAGATCCTCTGGGGCTAATGGGCAGAAGTCTGGGGAGATGGGGCAGGGCGTCATCTTCCCTAATGTCTGGAATTCCCTTCTGCACTCCACGATATAACCCCCACGTCTGCTAGAGAGCCTGAAATCggtcttttcttctttttcacatCATGATAAATTGCGATTTCTTCCCCTGTGATTTGTAGTTGATCCAAGTTCAATGCGTCTGCTACGATGCGGGATAAGTGCCTATAAATCTGCCAGACAGGGATGCTGGATTGTGATAGAAATAGCGCCATATACCTGGNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196363 lncRNA upstream 611 14979305 ~ 14980490 (+) True G155897
TU196320 lncRNA upstream 114622 14865914 ~ 14866479 (+) True G155856
TU196295 lncRNA upstream 219373 14760397 ~ 14761728 (+) True G155832
TU196244 lncRNA upstream 298099 14628442 ~ 14683002 (+) False G155790
TU196383 lncRNA downstream 69235 15050855 ~ 15055957 (+) True G155913
TU196399 lncRNA downstream 118700 15100320 ~ 15103379 (+) True G155929
TU196400 lncRNA downstream 118700 15100320 ~ 15103379 (+) False G155929
TU196403 lncRNA downstream 123975 15105595 ~ 15106403 (+) True G155931
TU196405 lncRNA downstream 126374 15107994 ~ 15109196 (+) True G155933
AMCG00006040 mRNA upstream 132963 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006041 mRNA upstream 153574 14819668 ~ 14827527 (+) True AMCG00006041
AMCG00006042 mRNA upstream 182246 14796612 ~ 14798855 (+) True AMCG00006042
AMCG00006055 mRNA upstream 224891 14742197 ~ 14756210 (+) True AMCG00006055
AMCG00006053 mRNA upstream 273977 14700791 ~ 14707124 (+) True AMCG00006053
AMCG00006031 mRNA downstream 9274 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006030 mRNA downstream 37166 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006093 mRNA downstream 110397 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006092 mRNA downstream 121923 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006091 mRNA downstream 167318 15148938 ~ 15156505 (+) True AMCG00006091
TU196155 other upstream 597521 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 871231 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 882405 14097804 ~ 14098696 (+) True G155637
TU195694 other upstream 1947693 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 2267088 12711778 ~ 12714013 (+) False AMCG00005984
TU196402 other downstream 121836 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 125589 15107209 ~ 15107734 (+) True G155932
TU196591 other downstream 596464 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 982813 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 1072415 16054035 ~ 16059830 (+) False AMCG00006113

Expression Profile