RNA id: TU196367


Basic Information

Item Value
RNA id TU196367
length 1238
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G155899
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14980384 ~ 14981621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNCCAGGTATATGGCGCTATTTCTATCACAATCCAGCATCCCTGTCTGGCAGATTTATAGGCACTTATCCCGCATCGTAGCAGACGCATTGAACTTGGATCAACTACAAATCACAGGGGAAGAAATCGCAATTTATCATGatgtgaaaaagaagaaaagaccGATTTCAGGCTCTCTAGCAGACGTGGGGGTTATATCGTGGAGTGCAGAAGGGAATTCCAGACATTAGGGAAGATGACGCCCTGCCCCATCTCCCCAGACTTCTGCCCATTAGCCCCAGAGGATCTTTGCAAGCCAGAGGAGCGATCCCTGGAGTTCAGATATCTCTGTTTTCGGTCTGATAACAATCTGTTCGTGACCCAGCGTGGCACAAGTGCGGGCTTAATTATTGCACATCAGTAGTGTTTATGATCTGCCAATCGTGTGTGAGGAAAGCCGCTTGGTGCGTAAGTGTGCTGGGAATGTATGTAGTCGGTTTTTTGGGTGCtggtggaaaataaaattgaaatctGGTTGAGTACCTTTTTTTCTATGTTACTGGGACTATGTGGTGGGACTCCTATATGTTCCAGTTCCAGGTGTCTGGCTTCCTGCTTGGTCGTTTTGTCTGAAGAAGTAGGAACGCAAAGTTGCTGCCAAAAAGAGAAAGTCCTGAAGCTCTGATAACTTCTGATGGGATCCATTCGCAGGATGAACCTCTTTATTCCTTTGAAATGGTATCCAGTTGGCTTCTTGCTTGAGGTGTACAGATGTAGTACCTATAGAATAAAACCCAGAATCCCTCATTCTCTCTCCATAACATAGAAATCTCATTTGGTGGAGAGTTTAGTGGAATTAAGGAATCCATAAGGCGCCAACTAATAGGGATTAGGAGCTGATCAGTAAATTTCAGTTTACACATGAAGAGGCTAGATTCCTTTCTGCGCATTAGCCGCACAGAGCAGGAATGATCAAAATCCAGTTAATAACTTGTTCTTCCGTTTAATTGAGAAACGGCGTCGGCTCGCAATATGTTAAAAAGCGGGCAGCTCAATCAATAACAAAAGGCTGAAAATGGAGCCCTGTTTATTACCTCAgctgatttttttctctcttctgtgATGGATTGACTTCTATCACTCACAGCTTCTGTAACTCATTTAACCCGTTAAATGCTTGGTCTGCCTTCCTCACTCTTTGTCCcctgagaagaaaataaaaagggatgGATTATTGGGAACTCTGAAGCCATTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196235 lncRNA downstream 410548 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 488455 14489290 ~ 14491929 (-) True G155768
TU196199 lncRNA downstream 555638 14422504 ~ 14424746 (-) True G155754
TU196154 lncRNA downstream 610202 14369761 ~ 14370182 (-) True G155717
TU196137 lncRNA downstream 657270 14318979 ~ 14323114 (-) True G155703
TU196378 lncRNA upstream 20789 15002410 ~ 15004191 (-) False AMCG00006102
TU196434 lncRNA upstream 118688 15100309 ~ 15105533 (-) True G155957
TU196477 lncRNA upstream 197430 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 223248 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 223695 15205316 ~ 15217634 (-) False G155989
AMCG00006033 mRNA downstream 48999 14920403 ~ 14931385 (-) True AMCG00006033
AMCG00006032 mRNA downstream 73226 14889140 ~ 14907158 (-) True AMCG00006032
AMCG00006044 mRNA downstream 104663 14866709 ~ 14875721 (-) True AMCG00006044
AMCG00006046 mRNA downstream 119649 14852157 ~ 14860735 (-) True AMCG00006046
AMCG00006047 mRNA downstream 128505 14850781 ~ 14851879 (-) True AMCG00006047
AMCG00006096 mRNA upstream 180 14981801 ~ 14992261 (-) True AMCG00006096
AMCG00006102 mRNA upstream 16879 14998500 ~ 15007979 (-) True AMCG00006102
AMCG00006103 mRNA upstream 49366 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006095 mRNA upstream 60562 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006097 mRNA upstream 69300 15050921 ~ 15060761 (-) True AMCG00006097
TU196327 other downstream 196378 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 297423 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 470770 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 639721 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 808777 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 451811 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 507781 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 972455 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1472748 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1523972 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile