RNA id: TU196383


Basic Information

Item Value
RNA id TU196383
length 4946
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G155913
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15050855 ~ 15055957 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctcctctctcaagGTTCTCTGTCCCATACACTGtagaaatgaacacaaaacaacaacatgcttctttgatcattttattttagggaGAACAATTTCAAATCAGTCACCCATTCATTCCCATAGTCAGACTGATTGCACCGAGGTTGAAAtcttgatacatttatttagaataaatacataaatacagcaattTTAAGGATTGTGCAAGGACAGAAAATGTAAGACTTTAAAACATTGTGGTTGAAAAGCTTATTTCCCTTTTACCAGTATGcacaatcagtacaaaacatGCCTTCAGTTTCTGAATAGTTGTATTTGACTGCATATATTGAAGGATTCTTTAATTCAAGATTGGCTAGTGTTGCATAGTTTGAACAACAAAGGTAACGTCAGTAAAATCAAAGAATCTGGAGAACAGAGATCAGACACACCTTTAATACCAGGTTGGTACCATGTGCTCTGCTTTGTAGTTCAGAATTATTGCCCGAGGTTCGGGATGTCTCCACATTTCATAAGTGCAGTGTGCAAGGCAAAGAGAttggaaaatctgaaaatatattataccTACCTCATTACTGCTTATCCACAGTGAACGAGGGGAtaccaaaaaatacattcaattcatTACATTGTCAGCAAAAACACCCTGAGAGGCTTGGTCACATCTTATAAAGACAAATCAAGACAACAGTTACCATTGATCCAACTGCAGTTGCAGTCCCCCTAGCATTATATATAGGAGTATATAGttacaacacaattacaaataagaattataataatgattaccTTGGCAGGCAAATGATTCAGGATAGGAAGGGCAGGAAGCATGTTAGGCTATGGAATTGCTGAGCAGACCGAGGATGGGAAGTTAAAAATTGGAAAGAGGCAATATGCTTGTTTCAGTGAcctttgagaaagaaaaacaaattcactgCCTTTTGTCACTTtgagacattttcaaatgtaacagAGGATAAGGTTTTAGGAACCCAGATATCTCTGTACCACGACCTCACCAGTTGTACAGGGCCTGACGTCCAGTTAGAAATTACTGGATTAGGTGATATCACTCAACGacaatattaactttcacaatTACGCAGACagcacacaattatatttgtcagtaaaccctaacaataccatagacatagAAAGACTAATCTGTTGTCTGtccgagattaaaacatggatgacaagtcattttcttatgcttaattctgataaaacagaagtcctaattttacgGGACAAAAATCCATCTGTTCAtcacacactgacaaaactgagtaatgacaACTTTAATTTCTCGCCTAAGGAGATTGCACagaacctgggtgtcatctgtgaccaTAATCCTGTGAATCACACAGaatcagaatgtgtcgagatcttccttcctccagctcagaaacattgctagacaattctaagacaattcctctcattacacgATATTTAGAAATTGATACACACacttgttacatctagattggattactctaatgcaggggttcccaatgtttggtgatggagggccaatttccggaggttgcatgggatggggggggccaagtagaaaatgaaccactgatgaaaacaaaatgtcccactatataaatatagtaaatgttcagaaaaggggtggttgaaggtggGCTTTGGGGGGCTGCACCAATCATCCTTGAGAGCCACATTTGGCCACCGGGCCGCACTTTAGGAACCCCTGCTCTAATGcaattctgtcaggcagcacaaatcAAGCtgtttctgcacttcagttattCAAATCAgaattctaattaaaacaaaaacacatgatcacagcactccagtattggcttctcttcgcTGGCCGCCCGTGCACTATAGGACAGACTTTTAAgttctcttattaacatttaaaatactaaagggactggcacctccctacttaaaagaccTCCTTAtcaaatacactccaggtcagccattgagatcccagtttctgtttttctagcccatagtgccgccgctgtgccatggacatgcaatgcacaattgtatttggagatgtcctgcactgcatgaccagtatctgagcacacctgtctttttgtcttccagcaacagccccctctgagggtgcgatgaggcacctcgtcccccaccgtCGAAGCCCgacgaggcacaacccaccTCAGAGGACCCCCACCACGGAGGGCTAACGGTacacccacaccccaaggtctgacgagctatttttcttttcccccgtgcctaaatggtttatttaaatgttaatttactttattttagatcatttaaactgttagaggtctatttttattttactttattgtattatgtatgtattcttttattCTGCTGTATAtctgttgtatgtttaccactctgtaaagcactctgtggctaccttgcgaagggtgctatacaaataaaaattgaaccGAATTGAAAACCTTTCAAGTAGGTGGGAAGACGGGGTTTCCGTCCAACTGTGgtgtgaataaaatattacGATTCCCGCCCCCCCGCCGGAGTATGATGGTTAGTCTTGGCAATGCTATACAAACTGTCATATTAGAAATGGAGgccaaaaaacacaatcatggAGGGAATAAACCATCTCATTCTGAAACAAAGCAATTGCATGGATTTCCTGAAGATGACTGGAGACAAACATGTCCAATGCAGCTAAAACAGTCTCCCAATAAGCTGCAAAGGCTAAATTCTTTTGAGGGTTTTAAAGGCGGCATGTACCTccgatttattaatttattccttAATTGAGGGTAGTGTGGTGATGCAAAGTCCAACATCAAACAAGTCAACAATGAACAACAGCAACAGTTAATTGCATAGTGTAGGAGCAAAATCCTCCTGCTGTAGACAAATACGAAGCACTGAAAAATCACCAATTTATTTAGTAGAATGTTGTTCCAGTGCCTTTACCAAATTTGCCAACAGCAGGATTGAAAAAGTCATATGACAACAGGCATTTAATATTACAggtcacaggaaaaaaaaaaaaaaagatttaaaaaaagttggGACAACAAATGAGTGTGTACTggctttatgtatttatagattCTTTCTTTTACCAACAATAAAGCTTAACACATTCCCCTCCCCCAATTGAGGCAAAACAGGAAGACCTTAGTAACTGCTGGTGACACTTTTCTGGCATGGCTTGAATTAACAGCTTCCTCACAACGCCAGCCtcagcaaaacagaaatgtaggCTCTCGGCTTccaagcaacaaaacaaaaacccacaaacaaatacagaatgtcTTGGGCAACATGACCACGTGTCAGGCTCAGAGACACAGAGTCAGGAAAGTGGGTCACAGTGCAGCCCATATCTCATCTGGAAAACTTGTCTTTTGGAGAGGTCCATACTAGTTTGCTGGGTGGAAAGTGCTAAAGATGCTTCGATGCAAAAATGCCACATTTGAGCCCGGGCTCATGGACACCTTGCCACATGACTAAGATTTCATACGGCAGGAACCGGTGCACCAACAGAATCTCCCGGTAATAACAGGGGTCATAAGAGTCAAACTTTTGAGAGGGCACGTGTAGCCCTGCGGTACGAACCCCGGCGTGTGACTCGGGGCGTAGGCCGGCCTTTTGCAGGCACATACCCATGTAAACATCATCAATGGGCAGGAGGGGAATAGAGAAGGACATGTTGTAGATAGTCCTAGCAGTATACCTAGAGAGAAGGAAGCCCCCTCCACCACAGTACGGAGGATACGAGTTGGATTCCTGGACTTGAACCGGGATGTAGTACTTGCTGCCAGATTCCCGGATGGGGCCCACGTATTGGATGAGGTGGCCCGCAAAGAGGTGTTTGCTCCCGTCGTTGCCCTCCAAGCCCTGCAAGTACTGTATCATATTGTCGGTGTTGGCGAAGATGTCGTCATCACCGTTGAGCAGGAAGTGGACTTCGGGACACCGGGCTTCCATCCATTCCAGGAAGAGGAGCTGTTTGAGAGTGAGGTTGTAGAACGTGTCGTCGAAGTCCCACTGTACGATGTCCTGGTACTCGCGGTGCTCGATCTCTAGGAGGCGGTTCAGCTTGCGCCTCTCCCGGTTGTTGCCTACCACCCCCGCCACGAAGAGGCGGCGCACCCACACGCCGTCCTGCAGCCGCTCCTTCCCCCACGTCTTCCGGATCACTTCACGGCGGTCATAGTTCCCCGGAGAGGTCTTGATCACCAGCAGCAGGAAGACATCCACCGAATCCTCTGGCGTCTTTCCGCACTTCTCGGGAACGTCCAGGATAATGGGAAACTCGCGGCAGTGGCGGTACCACAAGAAGTTCTTGATGTTCTCTGGGAGGGTGGCGAAACCAGAGATGTTGGCGGCAGTGGCGTTCACCTCACACGGAGACGGTGGTTTCAAAGGCAGCTGGAATCTGACGGTTTCGGGGAGCGGTGCAGCCGTGACTAGAGTGGTTCGTCTGCCTACAATCAGCTCCCCGGTAAGGTCCTCTCTGTAAAAGAACACTAGGAACAAGGTGGCGACCACAAGCAGCAGAGCTGTCTCCAAATAGCGAGCTCTCCATCTCATCTCTGCACCTGGGGGTGGAAAAATAACCGTCAGCACTGAGGATACATGTTTCAAAAGAGCAAAGAGAACCATGTTCCCACTGCACTGCCTGCTAGTTATCACACTTAATGAACAGGTTATGAAGTCTCCCTGGGTTTTGTTTATCAAAACACACTTTAGCCTATTGGTAAGCGTGGCCATTGCATGAAACGATGTTCCATTCATGTTTGCTGGTTTCTGTGCTAGTGTGTAAACTAGTTACTTGTGTCATGTTCCAAACTGTTAAATTCACTGCTTTGAAAAGGCACACCGCTTTGGATTAGGTGAAGAGActgcaagagaaaaaacaaatcagcaaaTTACCAGAGCAGAGAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196365 lncRNA upstream 69235 14981101 ~ 14981620 (+) True G155898
TU196363 lncRNA upstream 70365 14979305 ~ 14980490 (+) True G155897
TU196320 lncRNA upstream 184376 14865914 ~ 14866479 (+) True G155856
TU196295 lncRNA upstream 289127 14760397 ~ 14761728 (+) True G155832
TU196251 lncRNA upstream 367853 14628442 ~ 14683002 (+) False G155790
TU196399 lncRNA downstream 44363 15100320 ~ 15103379 (+) True G155929
TU196400 lncRNA downstream 44363 15100320 ~ 15103379 (+) False G155929
TU196403 lncRNA downstream 49638 15105595 ~ 15106403 (+) True G155931
TU196405 lncRNA downstream 52037 15107994 ~ 15109196 (+) True G155933
TU196406 lncRNA downstream 53636 15109593 ~ 15111175 (+) True G155934
AMCG00006030 mRNA upstream 8928 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006031 mRNA upstream 59497 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006040 mRNA upstream 202717 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006041 mRNA upstream 223328 14819668 ~ 14827527 (+) True AMCG00006041
AMCG00006042 mRNA upstream 252000 14796612 ~ 14798855 (+) True AMCG00006042
AMCG00006093 mRNA downstream 36060 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006092 mRNA downstream 47586 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006091 mRNA downstream 92981 15148938 ~ 15156505 (+) True AMCG00006091
AMCG00006090 mRNA downstream 126007 15181964 ~ 15185213 (+) True AMCG00006090
AMCG00006070 mRNA downstream 132267 15188224 ~ 15196741 (+) True AMCG00006070
TU196155 other upstream 667275 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 940985 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 952159 14097804 ~ 14098696 (+) True G155637
TU195694 other upstream 2017447 13025764 ~ 13033408 (+) False AMCG00005964
TU195534 other upstream 2336842 12711778 ~ 12714013 (+) False AMCG00005984
TU196402 other downstream 47499 15103456 ~ 15105567 (+) True AMCG00006092
TU196404 other downstream 51252 15107209 ~ 15107734 (+) True G155932
TU196591 other downstream 522127 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 908476 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 998078 16054035 ~ 16059830 (+) False AMCG00006113

Expression Profile