RNA id: TU196405



Basic Information


Item Value
RNA id TU196405
length 1203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G155933
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15107994 ~ 15109196 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGTGGTTGCCAACACAATGTTAACCTCTCGGGATCCTTGTCTTAAACGTGCAACTTAcgttttgtttgtaaattagCCAGAAACAATAAAGGATTTGTTTGACAGCTTTGATAATGATCCAGGGTAATTATACATACCCCTGGAATCTTATACCTTATAACAGACTGTCATAACTAAATCAAAGCTTGAAATGATGAGAACTCAGTCAAAATTGACTCTCTCCCCCTTATTTCTTCAAAGGGAGTCCTTGGGAGAAAAGTCTTGTGATCTTTTGAAAGCTTctgatgttttgcattttcaccAAAGGCTCTGGTTACAGTGCAGATATTTAACAAATCTGAGTACCTATCCAGAACTCAAAAAACTTGGCTTgaataacacacacatgcacataacCTCTATTATTCTCAAATTTCAAATTCTCAAAACCCCCCCAAGGCTTTCCCTCTGTAAACCAAAGTCTGACTTTTAGTGCAgccttttcttctttcattttatgACTTCACTTTACACTTACATTGTggagtaaaataaagaaaacaaaaccgtaTTCAAATGCTTTAAACATACTGATACAATGGTTcccaaaatatgtaattctgATTACATGTATGTTGGCATTTTTCCCCTACTGGCCACCGACAGCAaaaaccaaaaggaaaaataatgcaACTGCAATTTGGAAGCTATAATTTGTAGTGGTCTATGACTTAATGCTGTCACAAAAAGATAATCTCTCTATAATATAGTGGCACTAAAGTTTTGGTTTCAGTATTGGCAAGTTACATTGTATACACACTAATCTGGCGTAACCACCTATAAATAAAAGCTTGAGGGTGCAGCTGAGCTAACAGTGGCATTAGATATAAGTTACAAAAGAAAATTCCTGTCCGTCTGTCTGGCAAGAGCTGTGATTTCTCTTATTTCTCCAGTCGATAGCTGTTAACCCCATGTTACTTAGTTGAGGTGTAGGCGTGTTGGAGCGGGGATTCCCTCACGTTGTCCACAATGGAGATGTCACAGCCAGGCTGCTCCAGAAGCAGTTTGACGATCTCGGCGCGCCCGTGTTCACTGGCGCACATCAGCGCGGTGGAGCCCTCGTCGTCCTGGATGTTGACGCTGGCGCCGCAGTCCAGCAGGGCTTGAACCATGTCCTGCCGTCCGTGACTGACTGCCAACATCAGGGCCGTCTGCCCCGCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196403 lncRNA upstream 1591 15105595 ~ 15106403 (+) True G155931
TU196399 lncRNA upstream 4615 15100320 ~ 15103379 (+) True G155929
TU196400 lncRNA upstream 4615 15100320 ~ 15103379 (+) False G155929
TU196383 lncRNA upstream 52037 15050855 ~ 15055957 (+) True G155913
TU196365 lncRNA upstream 126374 14981101 ~ 14981620 (+) True G155898
TU196406 lncRNA downstream 397 15109593 ~ 15111175 (+) True G155934
TU196456 lncRNA downstream 76678 15185874 ~ 15187225 (+) True G155974
TU196547 lncRNA downstream 321280 15430476 ~ 15431939 (+) True G156042
TU196592 lncRNA downstream 452407 15561603 ~ 15605879 (+) True G156082
TU196665 lncRNA downstream 669003 15778199 ~ 15812111 (+) True G156130
AMCG00006092 mRNA upstream 2505 15103543 ~ 15105489 (+) False AMCG00006092
AMCG00006093 mRNA upstream 11157 15092017 ~ 15096837 (+) True AMCG00006093
AMCG00006030 mRNA upstream 66067 15018786 ~ 15041927 (+) True AMCG00006030
AMCG00006031 mRNA upstream 116636 14990894 ~ 14991358 (+) True AMCG00006031
AMCG00006040 mRNA upstream 259856 14838689 ~ 14848138 (+) True AMCG00006040
AMCG00006091 mRNA downstream 39742 15148938 ~ 15156505 (+) True AMCG00006091
AMCG00006090 mRNA downstream 72768 15181964 ~ 15185213 (+) True AMCG00006090
AMCG00006070 mRNA downstream 79028 15188224 ~ 15196741 (+) True AMCG00006070
AMCG00006071 mRNA downstream 95658 15204854 ~ 15215919 (+) True AMCG00006071
AMCG00006072 mRNA downstream 120769 15229965 ~ 15271081 (+) True AMCG00006072
TU196404 other upstream 260 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 2427 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 724414 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 998124 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1009298 14097804 ~ 14098696 (+) True G155637
TU196591 other downstream 468888 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 855237 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 944839 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 1031348 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1518597 16627793 ~ 16629182 (+) True G156327

Expression Profile