RNA id: TU196434


Basic Information

Item Value
RNA id TU196434
length 1164
lncRNA type read_through
GC content 0.46
exon number 5
gene id G155957
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15100309 ~ 15105533 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCATGGAAATCcaaatacatattcagaaataaacaatgacaATTAATTGCCAATCCAACCTTTATTGTCAAACTGTACACATCGTGCTTTTAACACTGCTTTACAAAAATCAGTGTCCATACTCCACAACAGTGGTCTTCAATGTGGGCGTGTCTTCCATCTTCACAAGGGACTCTAGCGCAGCCTCCTTGCTTCTCTTTCGGACTCCAGCAGGGTGAGCACATCGCCCTCTCTGACTGGGCCCTTCACGTTGCGGATGATGGATCGGTTGCTGTCGTCCATGAACTCGACACGCACCTGGAAACGGAGGAGAAGCGTCTCATTGCACCCAAGGAAACCCATGTAACAGTGCTGTCAGAGCAATCCACTGAAAGGAAACTGAATTATCCCATGCTTTAAAGATCAATCAAATACAACCATTTATTCCAGAAACGTTTGACAGACTGGGTCACACCCAAGTATCTTCCTCAGCGTTCATCTTAAATACCTGGCTTTAGGctaaattaatataatctataagAAATAACCCTGATATGAGCACTAGGACCAGGGGGTAACGCATTGCCAAGCTGAAGATATCAATTGTATAGCCTGGTATACACCGTGGGCACCGACATGGGTATTTGCTCATTCCTTCTTTAAAAGCCCAAAGAACAGCATCTGAGGACAGCACGATCTCCAAGCTAAGCTTCAACTTCGTTACACTGAGATCGCTAAAAGGACTCAGCCCCCACCTAATCTCCCAGTAGGGCCCAGCCACaagtttgcttttaattattactgCCTACGAGATGGGCGACGGGAAGCGGCCCCTCCAACGATTGTGATGTCGTCCCAGAAAGCACTGGCACCTGGCAGTGAAGTTCCAGCTGTACCTGCCAAGCTTCCAGTGGTGCCCGGACCTCCAGCGAGGGACCTGCAGCTGTCTACAGACCAGCCATACctctgagagagagggtgaggggggGTGTAATAGTCCTGCTGGTTTATGACAGTAAACCACTGCCGTTCACATCTCCACCTGCACTAGGTGCTCACTGctgctgtaattaaaaagaGCCACAGCCTAAACTTTAGGGCCCAGTCCCTTGTCTGTATTGTTCTGtataaagtaaaacatgaatccagtaaattaataaaaagtattatatatGTCATGGAA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196378 lncRNA downstream 96118 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 118688 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 118688 14981103 ~ 14981621 (-) False G155899
TU196235 lncRNA downstream 530473 14569562 ~ 14569836 (-) True G155783
TU196218 lncRNA downstream 608380 14489290 ~ 14491929 (-) True G155768
TU196477 lncRNA upstream 73518 15179051 ~ 15217634 (-) False G155989
TU196494 lncRNA upstream 99336 15204869 ~ 15212286 (-) True G156002
TU196476 lncRNA upstream 99783 15205316 ~ 15217634 (-) False G155989
TU196500 lncRNA upstream 101987 15207520 ~ 15298400 (-) False G156003
TU196478 lncRNA upstream 109597 15215130 ~ 15217634 (-) True G155989
AMCG00006100 mRNA downstream 11401 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 22541 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006097 mRNA downstream 39548 15050921 ~ 15060761 (-) True AMCG00006097
AMCG00006095 mRNA downstream 55818 15042183 ~ 15044491 (-) True AMCG00006095
AMCG00006103 mRNA downstream 68506 15030987 ~ 15031803 (-) True AMCG00006103
AMCG00006101 mRNA upstream 55788 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006080 mRNA upstream 272689 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 291719 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 363708 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 377629 15483162 ~ 15488681 (-) True AMCG00006082
TU196327 other downstream 316303 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 417348 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 590695 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 759646 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 928702 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 327899 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 383869 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 848543 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1348836 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1400060 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile