RNA id: TU196478


Basic Information

Item Value
RNA id TU196478
length 2481
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G155989
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15179051 ~ 15217634 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTtcatatatacaaaacatttattacatgCATTACAGTTTGCTCCCCgtcttccctccccctcttgTGCAATCAATGTCCACTGCaagctttcaattaaaatattcaaattaaaaaaaaagcatcaggAACATTTAAAGATTGATGACATAACTAATTTCCCTCTGAGGCAGATCTGCACAGGCCCAGTCCTGCTGCAATTAAAAGACTAAAGGCAATTTCTCAAATCTGGTGCAATCTAAAACCCAAAGATGCGGTTGCCCACTAAGACTGGATTTCTGCATGCCTGCCTATTTGGAATCTgagcagaataaaaacaaaactccaaGAGGAAACCAGTTACAAGGATCAAAAGAGTTCACATTATTCCTGGGCCTGCCTGGCCCATCCTCCATCCGTTTCTCATTCTGTCTCTTCAAGCAACGTGGAAAGTAGAGAGTCTTAACAAAATAATCCAATCGATTCCAGTTCCGAGTGCGGAATGTGCGGAGCTTGGCTTTGGAATGTTCCGAGACGCACCGATCCAAGCAAAACAAGCGAGGCCCGGTTATCAAGGCAGTGACACTGGTTAAGCAAACAGTACACATGGCTATACaaggtgaaaatatatataaaaaaaaaggggaaatcaTACTCAAGAGGTATTAACAGTGGTAAAGTAGGTGAAAACCGTAAATTGAACATTGTCATGGCATCTTAACGCCAGGTTTTAAAAGAGTGGAATGTTGATCACGGAACAGAAACCTAACCTTCCATCCTACTAATGTGGGGTTTCCATAACCCTGTGTTTAATTAAGctttttccaacatttttaAGCTAATTGGTCCCTCATTAAGATCCATCAACACAAGAACATTTTGGAAGATGGATAGACCCAAGGTCGAGGGGATGGGATGGAGAGAGTGACCAGTCAAGAAGTACAAGTTCTAAGCAATTTAGTATGCACCTCTGCAGGTCATAtccacagattgtttttttttttttttttgttctgcgATTAAGATGGTCCTGCATGAAATGTTAGGCTGATGCACAGTAAGTCACTTGTAGTATCAATGGGAGCATCCCGGAGGATTGGTCACAGTCATAGCTTAGAAACTGTGCCACACTACATCAAAACAAGGGGAGGCTGTATATTGCAATTCAACCAGCAATCTCCATCTGCTCAGtgaaagtaatatttaaaaggcaaaatGTATAGATCTGCTAAAGAGAGaatagcacaaaataaaaatagtcccttatatataaaaaataaccagTTTAATAgcactttaaatttaaaaggtGATCAATATTGTCACTTTCATTGTAAgcgatttaaaaaaattatacaaattagcACAGCCTCAGTttgacaatataaaaatacttgaatTCTAGAGTTGGTTACCACACAAGGGGAAATGGCTGTGCTTCTTAAATTAGTATCACTGATACAAACCCTTACTTAAAACATTCATACTTAAAAAAGGGACCCCCTTGTTTCAAGATGCggtataaataaaattgaaaaacgAAAAAGTTCATCTGCAGGCAAGTTTTCATTGGGTCCCCTTTATCCCTGTAAACATCCCTGTAAGTCGCTGCATTCCTCATGTTTTCAAAGGACAGccaaggaggggggggggtttgggTGAGTGTCATGGGAAAAACTGTAGATCTTCCTGGGTTATGCACAACAGTATCGCATACGTCAACCGtgggatatatttaaaaaaaaaaaaaaggaaaatggtaGGATGTTGCAGATACACGATTTGGAAAGACTCTAGCTGGTCCTCTTCTAGGGATTAAACAGTTTTGAAGCCAACCCCCCCcttaaaaaggaagaaaaaagccACCTGTGatcaaacaataaacacatactGTTCTTCATCTCACTGGGAGGGGCCACAATCTGGTTTCTGCCAGGACTGCAATGGATGCTGagagcctctctctctgtacagttTCCTCCTGCCTGGATGCTTGGCAAAGAGGCTGCTACGAGCTTCTTCACTGGTCAGAAAAACCCCTAAACAAGAACATCTCCTCAGAGAGGCACATCAAATTCCATTCTTCATCAAGTCTTCATTTCGGGAACAAACTACCAAGATAGGgggaattaaaaactaaaaataagataaaaataaaaagctatcTTTGACACAGCTCGTCACCCGCCCATTCTCTTCCCAAGCGCCCCTTCTTCACTGCTGGTTTCTAGTAGTCCTGCCCATCCTCTGGGTAGCCCCCCTGGTAGCCCTCATCCTGGTACTCTGGGTAGTAGGCCACAGCCTCTGCCCCATTCTCTCCACCCTCGCTCTTGGGGCAGTACTTGGCGTCGTAGATCTGCCGGCCCAGCCCAAAGTTCTGGCCACTCTGGTTGGCGCCTTGGGTGTAGCCCATCTGCAGGGACATGGTGCTGTTGTCGCACTTGTCAGTGCCCAGTTTCTGGTCATAGATGGCACGGCGGGTGCCAGGGGCAGTCATGCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196494 lncRNA downstream 2844 15204869 ~ 15212286 (-) True G156002
TU196434 lncRNA downstream 109597 15100309 ~ 15105533 (-) True G155957
TU196378 lncRNA downstream 210939 15002410 ~ 15004191 (-) False AMCG00006102
TU196367 lncRNA downstream 233509 14980384 ~ 14981621 (-) True G155899
TU196366 lncRNA downstream 233509 14981103 ~ 14981621 (-) False G155899
TU196497 lncRNA upstream 39865 15257499 ~ 15298400 (-) False G156003
TU196498 lncRNA upstream 39865 15257499 ~ 15298400 (-) False G156003
TU196512 lncRNA upstream 55179 15272813 ~ 15330546 (-) True G156014
TU196499 lncRNA upstream 78079 15295713 ~ 15318177 (-) True G156003
TU196530 lncRNA upstream 148470 15366104 ~ 15367641 (-) True G156028
AMCG00006101 mRNA downstream 33813 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 91802 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 111598 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 126222 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 137362 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006080 mRNA upstream 160588 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 179618 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 251607 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 265528 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 279119 15496753 ~ 15529324 (-) True AMCG00006068
TU196327 other downstream 431124 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 532169 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 705516 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 874467 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1043523 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 215798 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 271768 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 736442 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1236735 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1287959 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile