RNA id: TU196499


Basic Information

Item Value
RNA id TU196499
length 1821
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G156003
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15207520 ~ 15318177 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaaaaaaaacaaaaaaaaaGACCTGAAAATAAGCTTCACCCCAGTACCAAAGAGAACACACTAtacattcacatacacacacaaatatcttaCCGATATATACATCCACATGCATACATAAGGCATAAGTGCGTGTCAATGGTTGGCCAACACAAAATTCATGAATGTGCCACTTTACTACCAATGAAAACATGTCAAGTGCTCTGCGATTCCTCTATAATCTAACATTCCTATTCCCAGTTATACAAACGCTCACGTTCTAGCGATGCAAGTGTACGCATTTTGTTTCCACCCCAGTTTGCCATGTTACCAGGCGAAACAGAAGCTTTTTGGAAAGTAAACTGCGTTTCAAAAGGTAAGCCCCCAACTTTTGAACAGTGATACTTGGAAACGAATCGAAGTTAAACATTATCATTTCTGCGCAGAACGGCAATTCGTAGCCTTAATGAATCGCCAAGTTATATTCCAAGTTATAAAAtgaatcttattttaaaaaattgtatatgGAAAACAGCACCGGATACTTTTGGTTCATAATCGGGGGGTTGTAGGTTCAATGCGAGGAGTTCGTAATTCACCTGGACCGGCATGGACACTACATTCCCCAGCACAGGTAAGCTACGTTCACACATACGGAAATCAATAGCGGTTGTTCATATATCGTTGATGGCATATCTGGTGTACGAGGCAAGTAAAGTGTATTTGGAAATATGTGAAGTTGAAGCAGTTTCCCTGCTTTCTCTGTTCGTAGTTTGCAGGCTTAAACCAGCACCCAGATCTGGTTTGCTATGTCACCTCATCTGACAAGagtgattaaaattaatttgatgaCCAATGATCTTTCCTGTAGTAAATTAAGAGCAGATTCACTATGACTAAGTTTTCTCCTATATCCTTTAATGTGAGAATTCTGCTTCAGCACCTTGTTTGCTGGTTAAATCAGTGGGCTGCCAAGTGCtcaaatgcaatattaaaaatcattaatcTCATTAGATAATTAAGTTAAATGAGTCAGGGAGGGTTAATCAACAGAGTGAGTTTTTCCAACAGCCTCCCCTATATTAAACTGTGGTGTACCCTGCTAAAGGCACAGAAAATTGCAGCGAAGCACCGGCAAATCATAGCAAGTGCCTGAGAAGAGAGATGAGCGATGGAAATGCAAAGGAAACTAAACTAAGTATAATCAAGAAGGAAAACGGCAAAAGTAGGGTGCacgttttccatttttataagGGTCGAAGCTTCCGAAAGCCTGGAGTCCAAGCTGGCTCAGTTCACTCTGAGGGTCGCCACCTCTTAAAGCTTCACGCAGATactgaaacaataaataaaaatggatgcGGCTTTCCTACGTTTCGGTGCTTCAGTCCATGTCTGGCGATACTACTTCGATACTACTTAGTATCTAATGCATCCCAGGGGTAAAAAGAGGACGTTTGGATCCTAGTAAGAGTGGAAATTTTGTTGAggagtgtcttttttttttttttttttttttttaaggacgGCTTTTCCTGCCCCTTAAGTTGAAGCTGCATATCACATCGTAATCCCTGATCTAGAACCCTATCCCAGGCGTGAGACATCTTGGGAGGGGGGAGGCAGCCAGTCCTCGAGTGACGCCCggtatgattattataattttttttttttttttactttttaacccCCCCCACAGGGTGCGATCTGAGATGCAGCCTCTCTgcccctccttccctcagctCATCTGCTCCAGGTAGGCAGACAGCAGCAGGTCCGGGGGCAGGAACTCCTCTTGTTTGTTCACCACCTCCGTCTGGCGAGCCCCGTTGCAGTCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196477 lncRNA downstream 78079 15179051 ~ 15217634 (-) False G155989
TU196476 lncRNA downstream 78079 15205316 ~ 15217634 (-) False G155989
TU196478 lncRNA downstream 78079 15215130 ~ 15217634 (-) True G155989
TU196494 lncRNA downstream 83427 15204869 ~ 15212286 (-) True G156002
TU196434 lncRNA downstream 190180 15100309 ~ 15105533 (-) True G155957
TU196530 lncRNA upstream 47927 15366104 ~ 15367641 (-) True G156028
TU196553 lncRNA upstream 99801 15417978 ~ 15423850 (-) True G156048
TU196556 lncRNA upstream 109131 15427308 ~ 15431930 (-) True G156049
TU196599 lncRNA upstream 116947 15435124 ~ 15436866 (-) False G156088
TU196629 lncRNA upstream 263680 15581857 ~ 15584766 (-) True G156104
AMCG00006101 mRNA downstream 114396 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 172385 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 192181 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 206805 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 217945 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006080 mRNA upstream 60045 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 79075 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 151064 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 164985 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 178576 15496753 ~ 15529324 (-) True AMCG00006068
TU196327 other downstream 511707 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 612752 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 786099 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 955050 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1124106 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 115255 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 171225 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 635899 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1136192 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1187416 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile