RNA id: TU196530


Basic Information

Item Value
RNA id TU196530
length 428
lncRNA type inter_gene
GC content 0.68
exon number 2
gene id G156028
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15366104 ~ 15367641 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCGGAGTCATGCGAGGAGCATTCGGACACCGTCCTCTCACGAACCGCCGGGGCTCGTACCGGCTCTCTCCCGCTCTTGGCCGACGGCGGCGCTCTCTTGGGCCGGGGCCGCTGCCGAGGGGTCGTGGGGCTCTCCGGGTCCTTCGGAGACGAGGCCGGGATCCTTCTGGACCTTAGATCCATGTTCCGCCTCGAAGCAGGTCGGCTGTGATGCGAGCCGATGCGTTTTCGCGGGAGTCTGCCGGGTCTTTTCCTGGTTCGCTCTGTGCTGAGGGCGGCCTCCTCTCCCGTCGGCTGCGCAGTTTGAATCTGCCGGGCCGCGGAGCCTGCGCGCCTGTGCGCCTGTGCGCCGCCTCTTAGCTGCGGGCTGAGCGGTGCATCATGGTCCCTCCGAGTCCCTCCCAGTGACGCAGTGTCAGAGCCGCCC

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196512 lncRNA downstream 35558 15272813 ~ 15330546 (-) True G156014
TU196499 lncRNA downstream 47927 15295713 ~ 15318177 (-) True G156003
TU196500 lncRNA downstream 67704 15207520 ~ 15298400 (-) False G156003
TU196497 lncRNA downstream 67704 15257499 ~ 15298400 (-) False G156003
TU196498 lncRNA downstream 67704 15257499 ~ 15298400 (-) False G156003
TU196553 lncRNA upstream 50337 15417978 ~ 15423850 (-) True G156048
TU196556 lncRNA upstream 59667 15427308 ~ 15431930 (-) True G156049
TU196599 lncRNA upstream 67483 15435124 ~ 15436866 (-) False G156088
TU196629 lncRNA upstream 214216 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 247921 15615562 ~ 15615787 (-) True G156113
AMCG00006101 mRNA downstream 184787 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 242776 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 262572 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006100 mRNA downstream 277196 15080401 ~ 15088908 (-) True AMCG00006100
AMCG00006098 mRNA downstream 288336 15074200 ~ 15077768 (-) True AMCG00006098
AMCG00006080 mRNA upstream 10581 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006081 mRNA upstream 29611 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006079 mRNA upstream 101600 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 115521 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 129112 15496753 ~ 15529324 (-) True AMCG00006068
TU196327 other downstream 582098 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 683143 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 856490 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 1025441 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1194497 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 65791 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 121761 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 586435 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1086728 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1137952 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile