RNA id: TU196547


Basic Information

Item Value
RNA id TU196547
length 436
lncRNA type inter_gene
GC content 0.24
exon number 2
gene id G156042
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15430476 ~ 15431939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttttttttttttttaagaatagatCGACTGTCCGTCGCCATCAGCACAAACAATATTCcagatacaaaaaatgtaaacagggtTCCCAGTCTCTCTATTcagctttaatttaaatcaataataaaaaagggttttatttttcattttttttcattttgttttttttctctgagcCTTTTaccatttattgtaaaatgttaaaaaaatagaatatatatatatatatatatatatatatattacatttaaacagactGCAATTTTTTAAGAGAATTTTGTACTATTAAATGTATGCTtagcttgttttttaatttaaagatgtaGAATTCCCTCAGGTGGCAGTTTTAGTGCATTTTGCACTTCTtcggaaaacaaaacaaaaaaaaaacatttcaaataaaagttttgaagaaaaaaatcttcatGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196456 lncRNA upstream 243251 15185874 ~ 15187225 (+) True G155974
TU196406 lncRNA upstream 319301 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 321280 15107994 ~ 15109196 (+) True G155933
TU196403 lncRNA upstream 324073 15105595 ~ 15106403 (+) True G155931
TU196399 lncRNA upstream 327097 15100320 ~ 15103379 (+) True G155929
TU196592 lncRNA downstream 129664 15561603 ~ 15605879 (+) True G156082
TU196665 lncRNA downstream 346260 15778199 ~ 15812111 (+) True G156130
TU196694 lncRNA downstream 401140 15833079 ~ 15833294 (+) True G156155
TU196744 lncRNA downstream 601022 16032961 ~ 16035969 (+) False AMCG00006111
TU196847 lncRNA downstream 1032069 16464008 ~ 16467676 (+) True G156279
AMCG00006078 mRNA upstream 69 15402929 ~ 15430407 (+) True AMCG00006078
AMCG00006077 mRNA upstream 33379 15392880 ~ 15397097 (+) True AMCG00006077
AMCG00006049 mRNA upstream 52371 15373975 ~ 15378105 (+) True AMCG00006049
AMCG00006050 mRNA upstream 58338 15366054 ~ 15372138 (+) True AMCG00006050
AMCG00006052 mRNA upstream 74371 15328797 ~ 15356105 (+) True AMCG00006052
AMCG00006076 mRNA downstream 1602 15433541 ~ 15436677 (+) True AMCG00006076
AMCG00006066 mRNA downstream 105622 15537561 ~ 15544353 (+) True AMCG00006066
AMCG00006065 mRNA downstream 146305 15578244 ~ 15584647 (+) False AMCG00006065
AMCG00006060 mRNA downstream 170993 15602932 ~ 15603849 (+) True AMCG00006060
AMCG00006059 mRNA downstream 176760 15608699 ~ 15614431 (+) True AMCG00006059
TU196404 other upstream 322742 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 324909 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1046896 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1320606 14108173 ~ 14109870 (+) True G155638
TU196052 other upstream 1331780 14097804 ~ 14098696 (+) True G155637
TU196591 other downstream 146145 15578084 ~ 15584761 (+) True AMCG00006065
TU196746 other downstream 532494 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 622096 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 708605 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 1195854 16627793 ~ 16629182 (+) True G156327

Expression Profile