RNA id: TU196556


Basic Information

Item Value
RNA id TU196556
length 3088
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G156049
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15427308 ~ 15431930 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttcttcaaaacttttNtttttttttttttttttttttttgtactttcatCAAGTATGTATGTGAttgtcacaaaaaaaacaagtcctCAAATTCAGAATCCCTGGTCAGAGGTACACACCAGAAATCCAGTTGTGAACAGAATAATTTCCCTGACGTAAGATAGTTAAGCTCTGTGGGGTACGGTGTGCCCTCAGCGTCGATATGGGTGGAAGCCCTGTACGTTGTGATTCTGTCCTCGGCCGAAGCTGCTGCCTGCTGGCTGGGGCCCAGCGGCCGGCTGTGCTGAAGGCGCTCCGTAGGTGGGTGCTCCCTGGCTGGGGTCTGCGAAGCTCTGCCCAAACCCAGCTATGTCCTGCCCATAACCTGCTTTGTGCAAGACAACAGAAACCACCATTTAGACAATCGGCCTCAATGCTCACAGTTCGCTAGAGAGCGTTGCGACTCGCACTATATTACCAAAAGCTTTAGGATATGAGAGACGAAAAGACAGGCCTGTCCTGAAGGGTCTCTGTAGGACGGAGCTCAAAACTGAGCCATGAAAGGTTGTCAGTGCTGTTCTCCTTGAGGTCTTAAATTCACCGCTTCTTGTTTGAACCTTTTAGAAGATGTAAAAAATCCAATGCTGCCAAGACCCAATTACTTATCTGCCCAATTTAATACCAAGCAATAATTCCTGTTGTACATGCTCACTGGGGCACTGGTCCCATTACTTTTGGTATTACAGAGAATGTGAAAGCGGTGATACTCACCTCTGTTCCTGGACAAGCAAGAcagcattttattgtttgtttttaccccCAAGAAGTCTTCATGACTTAATTTGTGATGCAATTGATGTTTAAGAGTGCTATGCAACACAGTATTTTATCACAATAATGGGGAAAACATTTACTTactcatttaacagaaataagatTAGTTCAAAGGTATTACTTTTGTATCTATTCATGTATATACTCAGGTGTAATAGGTGATATGTTTGACCCAGTTTGACATGACTGGCCACAACCAGGCATGGAGGGGATCTTGGACtgtatagatgttttttttaatccaactgtcaaataaactaatttatacataataataagtCAATTTTAAGGAATGCAATCccagccatttaaaaataacctaCAATAACGTGCTCGGATAATTTTctTTGGTGCCTTTTCCTAGAAATATTGCCACTTTCTCTTGCTTCTCTCAGGctttccccctcccctctctgtcAACTGAAATCAAAGGAAGGTTTGCTAGAGTAAATGTGCCTTCCTTTTTTATTCTGCCATTTCAGAGGGAAAaaggtacaaaaataaaaatgtttgttactatctctgcaataaaaaaacaagtgccACACTAAATTTATTGAGATGAGTTATgctgtgtgttatatatacactataattatgaatgtaaaatacatattttctgtataatatGACTACCAGACATGTTGGTTTTCTAAAGGACTCCAGGCCACTGAAATTGGGTGATACCATCTAACCAAACTGGATTAGAGCAGACAGAATATCAATGCTTTCATGAGCAACTGGCATTGTTATCATCAATTGATGTGAAGAAGTTGTCACATGAAAACAGGGCATAAGACGTCTGTGAAAGTGTGTAAAAGAAGGTCAGAGTCCAGAGATATGCAGTTTTATGATCAAATCTTCTCATTGGAATTCATGTCAAACTGTACACACAACttaaatgacagaaaacaaatacaataaatgaaatggaaacaaaaacatgaatacaaaaaaagaaaacaataacaattagaTCATCCTTTACCAGCAAAGCATTGCAGgaagagaaaatacatatagAGACTACACAATACGTACCCAGAAGCACAGACACCCTGAGTTAAGTTGGGTTCGTATATTAAACTACAGCTATTTAAGTGGAAAGAGAATTTCGTCCCTcagatttttgcattttgacatTCTCACCAGGTATGAAAGTGTTTTTGCCCCTCACTTCGATCTCTGCTCTCAGTGATTCagtgaaaaatctaaaacaaagcaaaccaaccaaaaaaagcTTGTTTTCAGACCACAATCAGAAACATTAATGTAGAGATGTACTTAAGATTTCCAAGGCTTTTCACACCTAGTGAGAGCTGAACCAAAACTGCCAGCACCATCCAAGCCAACTCTAACATCCGATCTGCATAACCCTACTTGAACCTGCATAGCTGTATTTTagtatacttaaaaaaacaaaaaaaaatacaggttaGGAAAGAACAAATCATCTTGCATGGTTCATTATTGCTGCTACCGAACCAGCTATTGGGCTATTTTGTGGTGTGAAAAGCAACGCTCCACCTACCTGCACTACATCCCTGCTCAGCCTGACCATTATTGTGAGAAGGACGCGCTGGTCCGTAGCCAGAAGGGTCCTGAGGATAGTTACCCAAGCCTATTAGGGAGACGAGGAGACCAGGTTGACTAAACCCAGGAGATCCTATTTGACATTGTTGCTATGGAAGAGGTCCCAGTCATTACCCCTGCCGCTGCCATCGCTCCTGTAACTGGCGGCTCCAAAAATTGTCAAAACTACCCAACTAGCTGGCAGCCCCAGTTGAATCCGATGAACAAAACAATTTGTAGTTTCTATCACTGAAATTAgactttcaaatgtaatttttaaataaggtggtggtgggggggtggaacaGAATAGGAATGGAATTGTCCCAAGACGATGGAAGACAAAGGTTTTGGGTCTTCTGGCCATGTTTTGACTTGTTTGCGGTGAGGAGGATTCTCATTCCAAATACCTAACATCTGTCATACCGCTACTATGCCGCCAGAGCAAAGCAAACTAATGTGCACAAACTCGCTGATCCATTCCCCCCCAGCACCGAACTCTGCAACTCCGGTGTCCTCACAGCTGGAGCGTCCATCTGTCGCTGGAATACACATGACTGCTTCACACTCGCATTGCGGCCTGCTCTCCCCAACAACGCAGGCTTCGAAACAATTCAGGCGTGAGCAGGACACGGAAAGCACAGATATAATGGCACACTTTTCTGAACACAAAAGGGTcaaccttttcattttcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196553 lncRNA downstream 3458 15417978 ~ 15423850 (-) True G156048
TU196530 lncRNA downstream 59667 15366104 ~ 15367641 (-) True G156028
TU196512 lncRNA downstream 96762 15272813 ~ 15330546 (-) True G156014
TU196499 lncRNA downstream 109131 15295713 ~ 15318177 (-) True G156003
TU196497 lncRNA downstream 128908 15257499 ~ 15298400 (-) False G156003
TU196599 lncRNA upstream 3194 15435124 ~ 15436866 (-) False G156088
TU196629 lncRNA upstream 149927 15581857 ~ 15584766 (-) True G156104
TU196640 lncRNA upstream 183632 15615562 ~ 15615787 (-) True G156113
TU196754 lncRNA upstream 515278 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 562857 15994787 ~ 16000039 (-) True G156207
AMCG00006081 mRNA downstream 26344 15397252 ~ 15400964 (-) True AMCG00006081
AMCG00006080 mRNA downstream 36727 15378222 ~ 15390581 (-) True AMCG00006080
AMCG00006101 mRNA downstream 245991 15161321 ~ 15181317 (-) True AMCG00006101
AMCG00006099 mRNA downstream 303980 15104332 ~ 15123328 (-) True AMCG00006099
AMCG00006094 mRNA downstream 323776 15098331 ~ 15103532 (-) True AMCG00006094
AMCG00006079 mRNA upstream 37311 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006082 mRNA upstream 51232 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006068 mRNA upstream 64823 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006067 mRNA upstream 112908 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006069 mRNA upstream 133532 15565462 ~ 15574687 (-) True AMCG00006069
TU196327 other downstream 643302 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 744347 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 917694 14509233 ~ 14509614 (-) True G155770
TU196147 other downstream 1086645 14336891 ~ 14340663 (-) True AMCG00006013
TU196074 other downstream 1255701 14168090 ~ 14171607 (-) False AMCG00005997
TU196602 other upstream 1502 15433432 ~ 15436866 (-) True G156088
TU196604 other upstream 57472 15489402 ~ 15491642 (-) False G156088
TU196760 other upstream 522146 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 1022439 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 1073663 16505593 ~ 16518111 (-) False AMCG00006118

Expression Profile