RNA id: TU196629


Basic Information

Item Value
RNA id TU196629
length 2875
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G156104
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15581857 ~ 15584766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGATTCTTtccatgtcattttattttataaaaagaaaaatccaacACTTCTTGAACATTTACAATTATGACAAATCAATCCGTTTCAGCATTCAGTTTCATATATGATCtcgaacataaaaaaaaaaagttgtcttgTAAATAGGAGAGAGTTCATTGGGAGAAAGGAAATGATTACAAACTTGTCAAACAAATCAGGGTAGATGGGCGGGGGGTGATCTGAACAAACTACTCTTTTATACAGTAACACccgttcacacacacacgcacacgtacacacacacacacacactaaacagcTGGCCACTCCCTTAGCCCTGCTGGCTTTTATTATGTGAATATCCTCTCGGTCAACCCAGCTGAGTGAACAGAATGTATGAGTCATGTACCAGCCCTTGGGAGtgaacttaaattaaaaagacagcTTATATTTCTACAAAGCCAAGATGTCTAGTTTGGGAATTCCTTGTTCGACTAATTTTCGCCCATCCCCGAGGCGTTTTTCCAACAAGCCCGACAGGTTCAAACCAGGCCTTATCTGACTTGGGTTTCAGGTCCGATCGAGCACACCAGATTCTAACCAACCGTGCTCGTTTGTCCGTCAGAGCCATTAGTTAATAGCTCGTTTGGCGTCTCCAGCAGTAATCAATTCAGAGGATGTTTTGGCGGCTCCCCTTTTTCCTGCCTTCAAATGCCACATCCGAATACTGACATTTCAGGAGGACGGTTATTAAACACGCACACAGCTTTTACCTGTCTGGAGTGGGGCTTGTTTTTCCAAAAGGGCCAGTTCTCCCGTATTTAAATCGCAGCTTGACAAACATCAAACCTTCTTAAAAGCAAACCACACATCCAGGGCAAATTTATGGAGGAAACTAAAGCAAGATATTTTGAAGGAGCAGCAGGTTTCTATGTGAATGAAAAACCCTGACAATCAGACCACAAAATGgtggtttgtttagtttatttcttgAATCCAAATTTTGCCACCCATTCCTCAGCACTGTGCCAGACAGACTTAAATATTGTTAAGGTAAGTGAAagcctttaaaaagaaaaaaaaaaaaaaaaacataagttaGTCCTATATtcccattttcaactgactgcAACACATgtagagacacactgacagtctGCTGATGGCACCGTCAACTACAATCAAATGtatgaatcattaaaaaaaaaaaacaggtcagACAGTTTGTTAATCAGCCTGCAGCCATAAAAGATTCAAGACGTCCacctatttattaataattgagtGTCTCCGAATTCACCCATtgggaaaaactaaaagaatGAATGACAACAAACCCTAGTAGGTTTGCTAATAAATACTGATCAATTAGTAATTGACAAATGTATAGTATACTGAAGGAAATGCAGCAGCATAGTACAGGATGCATTTTAAActccttatttgtttatttcaaagctCAAACCCGGCCCCAGCcaaatgtttcttaataaaATCACGTGACAGCAGAATAGCTCTTCAGAATTCAGTTTCCAATAAACCACAGTAATCGTTTTGCTCctttaacagaaaacaaaaagggtcTCAAACCCccgttttatttttcactgaaataaaaatcgGTCTCCAAAATGTACATGTCCAGAACAAAACCAGCTAACGTTAACAGTTCCTCAAAAATATGTACTGCAACATCATCCGTTCCTCCTAAACACTGCCCACATGTTTCAAAATTCTGCTTTTATCATATCTTCAGTCTCTACATTAGAAACCTTGTGAAAGAGACTTTTCAACCTGCAGTCACCACCATCGCATTACGGAGTTAGAAACATAAAATTAGCTAAAGGCCTCAAAGCAAGAATCTGTTCAATCTTAATGCTGCCCATTAAATGCCATCTGTAACCTCCTTTACGGTTTGTTATGTACATCAGGACAAAAGATTGTCCTCAATTCACAAGCACAACCCACCCGTAAGAGCATGCCTGGACACATGCCATATAGGCTTCAGTGTCTAGTATGAAAAGGTGCAGTTTCTGGTCTTGCTTGTAGAACTTTagctaaaacaaatgaataaaaacaaatgacaataaataacaaaccaGGAGCTGAATCATTACTTCTGTGCACACCGCAATCCAAGCTCTCCTGGGCTTTGCGTCTGTCATTGTGCTCATGCAAAGGTCATATCACCCCGCCGGTGAGAAAATGactaacttttttatttttttccttcatcaTTGTCACGTCGAAACACTAATTTTGACAATAATGATTCATCAGGAAGTAGTGAGAGATGGGTTTCGGTATTACAGTTGAAAACATAACTCTTTTACTACAAAACGATATGTCATtgaccaaaaaaatatatatacacgtttTTTCTGAATGGCTCGCATTTGTAAACTTTAACCGAGTGGTGAAATGAGCTTGTGGTGCCCGACAGCGCACTCTTGCGAGACTCAAGGCTGAGGCGTCGAGGTTTTGTACGTTTAAGAGGGAACCAAAAATACACAGATCTTGGATGGCAGCCCTTCCTGAGTACATTTGAAATCAAAATGGCTTTTCGTGGCTTGAAGGGGAGAAACGATTGTTAATTAAAGCAAGTAATCTGGTACATCTTAACTGGCACCCCTAGCTGGGCTGTAGCATTCATTTCACAGGCTGCAGACAGAGAGGATCCGAGGGCAAAGCATGGAGTGGCTCAGACCGCAGGCCTGCGCTGGGCTGGGCAGGGCCACTGTGTCGTGGGGGTGCTCCCAGGCCAGGAGAGCGGGGGCCCGGCACCGATCACACCCCTCCTCAGTGCTGGTTTTTCCCTCCTTGCTGCTTGCCAGGTTTCTTCTCCTGCTGGCCTCGCCCGGCCCCTGGGATGCCCCTGCCACGCCCCCCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196599 lncRNA downstream 144991 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 149927 15427308 ~ 15431930 (-) True G156049
TU196553 lncRNA downstream 158007 15417978 ~ 15423850 (-) True G156048
TU196530 lncRNA downstream 214216 15366104 ~ 15367641 (-) True G156028
TU196512 lncRNA downstream 251311 15272813 ~ 15330546 (-) True G156014
TU196640 lncRNA upstream 30796 15615562 ~ 15615787 (-) True G156113
TU196754 lncRNA upstream 362442 15947208 ~ 15947527 (-) True G156203
TU196762 lncRNA upstream 410021 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 477967 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 481903 16066669 ~ 16071528 (-) True G156228
AMCG00006069 mRNA downstream 7170 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006067 mRNA downstream 22508 15544838 ~ 15559349 (-) True AMCG00006067
AMCG00006068 mRNA downstream 52533 15496753 ~ 15529324 (-) True AMCG00006068
AMCG00006082 mRNA downstream 93176 15483162 ~ 15488681 (-) True AMCG00006082
AMCG00006079 mRNA downstream 101539 15469241 ~ 15480318 (-) True AMCG00006079
AMCG00006075 mRNA upstream 188912 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006085 mRNA upstream 193441 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006086 mRNA upstream 204581 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006087 mRNA upstream 256146 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006116 mRNA upstream 416787 16001553 ~ 16012344 (-) True AMCG00006116
TU196604 other downstream 90215 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 144991 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 797851 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 898896 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 1072243 14509233 ~ 14509614 (-) True G155770
TU196760 other upstream 369310 15954076 ~ 15957090 (-) True G156206
TU196870 other upstream 869603 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 920827 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 1085035 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 1363231 16947997 ~ 16950117 (-) False AMCG00006127

Expression Profile