RNA id: TU196665


Basic Information

Item Value
RNA id TU196665
length 2001
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G156130
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15778199 ~ 15812111 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGAATGGAGAGATTTATTGCTTAATACCAAGACTTTACCAAGAAAAATTGCAatgtcaaaaatacaaaaatgtgcatttcatttttatttaacatttcaggTGTAAGTCAGTAAGTACTTAGACAGTGTTGAACTTTCAACCAAACTTACACACACTGCATGTGGATGTGTCATTTTTGGGATATATAAATTGAAAGAGGAATAATGGCATTCctacacacatttctgtattgcaaacaaatcacctaaatgcacatttcaaaaGAGACATTTTGTGCAGCTGTACACTAATGACAGTCTTAAGACATTTACAGTCAAGTCACACTCAACTGAAacacagcatttttaaatgcacctttgattgttaaaaaaaaaaaaatatatatatatatagaccatTGTGTcctttataaaaaacaaacactgggaAATTATAAAAGGAATTTcattagaaaacaaaaggcaCCAGATTCATCAATAAGTTGTGTATCACACCGAGTCCTCACTTCTCCATGCTGGTCTTATTGcatcccattaaaaaaaaaaataataaatcctatCATAATTTAGTGTCAAGAAACCATGGTCTGTGattttaccaaaacaaaaacaaatgatccCACCTTAGGTTACATAAACCAGTTTATGTGCAGACTCAAGATATTTCCATAGAACATAACGAGATATTGACCAGATTGCTCCCTTTACTTTTCAACAGTCTATAAAACTTAAATGTTAATGGATCAATAACAGGGAGCTGAACCTTTCAGATCTGCAGAACAGAGAGATGAAaaagccacaaaaaaaaaaatcaaatagaGGGTTTGCTCAGAGTTTCTGGCCCTGCCAAGTACACAAACTACAACAGACAAAGTCATTTATCAAGACCAATTCTAAAAACCCTGTAGTATTATAAATCATGTGGACATCGGTTAAAACAATCCAGTTTTGGAATATGAAGCTCAATGCACCCTGTACACATTATCTATTTCAGTGCAGAAGAGACTTCAGTGGGAAAGATCAAGGGCAGTGGCTGCAGTAGATTAAGAAATCTGATTGTATGGCTCACTGAACATTACGAATAGTGCAATTTGACTGCCCACCACCTCCCAAAAATAACTAACCAAAAGTGCTACTCTGTATATGTGCTTGTCAAATTTTGTCCTGGAAAGCCCcaatgtcatagaataaagggCAAGTCAAAATCTTACATCTACAAGAAACAATGACTTTAGGAGATTCAGaatagtgttttgtttttgttttttaacccctGAAGGATGTCAACTACAcagacattcaaaaacaaaaaccccaaaTTGCAGATAGCATCAATCTGGGTTTGGTAAACCTAACATCAACCAGAGAATTATACCAAATTAAACGTGAAATGAGACCAATCTAAATTGTATTAACGTTTTAGGGACATTGAGGGGAATTTCCTTAAACTATAATGCTCTATGGAACATTTATTGTTCCAAGTCATAGTAATCTAGTATACATAttccaaaacaaatctgaatacaCGTTTTCGTCATTATCAATTTAACAAAAGGGTTTTGGGTGCATACTGGTATGTATAGGGAACGTACTCGAACTATCTGCAGGGGCTTCTCCATCATAGTAAAAActggctgctttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttacagacaaacaaaattgtaaagatttaaaagtAAAGAATTGACTCATCGTGGCCAAACTTGTAAGTCCCTGTAAGACTATTGACCTTTCCTAATCACAAACAGATTCCAATCCAACTCCGTTGGACTTCACCTTCTCAGTCTTTGTAGGAGACAGTCTGGGAAACAGTTGCAAGGAATAGGAAGATGCGAGTTGGTAATTGATAGGCTGGGCTTAGTCGGGACCTTCTTAATGAACAGGCAGGGAATACAACCTTAAAAAACCTGGACAGCAGTCGCATTTTCGATGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196592 lncRNA upstream 172320 15561603 ~ 15605879 (+) True G156082
TU196547 lncRNA upstream 346260 15430476 ~ 15431939 (+) True G156042
TU196456 lncRNA upstream 590974 15185874 ~ 15187225 (+) True G155974
TU196406 lncRNA upstream 667024 15109593 ~ 15111175 (+) True G155934
TU196405 lncRNA upstream 669003 15107994 ~ 15109196 (+) True G155933
TU196694 lncRNA downstream 20968 15833079 ~ 15833294 (+) True G156155
TU196744 lncRNA downstream 220850 16032961 ~ 16035969 (+) False AMCG00006111
TU196847 lncRNA downstream 651897 16464008 ~ 16467676 (+) True G156279
TU196875 lncRNA downstream 692659 16504770 ~ 16505206 (+) True G156302
TU196896 lncRNA downstream 787421 16599532 ~ 16599858 (+) True G156321
AMCG00006074 mRNA upstream 11559 15753228 ~ 15766640 (+) True AMCG00006074
AMCG00006073 mRNA upstream 33047 15726670 ~ 15745152 (+) True AMCG00006073
AMCG00006061 mRNA upstream 137721 15640272 ~ 15640478 (+) True AMCG00006061
AMCG00006059 mRNA upstream 163768 15608699 ~ 15614431 (+) True AMCG00006059
AMCG00006060 mRNA upstream 174350 15602932 ~ 15603849 (+) True AMCG00006060
AMCG00006106 mRNA downstream 94078 15906189 ~ 15918591 (+) True AMCG00006106
AMCG00006105 mRNA downstream 112518 15924629 ~ 15926560 (+) True AMCG00006105
AMCG00006104 mRNA downstream 135097 15947208 ~ 15957100 (+) True AMCG00006104
AMCG00006107 mRNA downstream 152339 15964450 ~ 15988775 (+) True AMCG00006107
AMCG00006111 mRNA downstream 220781 16032892 ~ 16035958 (+) True AMCG00006111
TU196591 other upstream 193438 15578084 ~ 15584761 (+) True AMCG00006065
TU196404 other upstream 670465 15107209 ~ 15107734 (+) True G155932
TU196402 other upstream 672632 15103456 ~ 15105567 (+) True AMCG00006092
TU196155 other upstream 1394619 14375995 ~ 14383580 (+) True AMCG00006009
TU196053 other upstream 1668329 14108173 ~ 14109870 (+) True G155638
TU196746 other downstream 152322 15964433 ~ 15973006 (+) False AMCG00006107
TU196781 other downstream 241924 16054035 ~ 16059830 (+) False AMCG00006113
TU196796 other downstream 328433 16140544 ~ 16144623 (+) False AMCG00006089
TU196902 other downstream 815682 16627793 ~ 16629182 (+) True G156327
TU197026 other downstream 1311094 17123205 ~ 17127554 (+) False AMCG00006149

Expression Profile