RNA id: TU196760


Basic Information

Item Value
RNA id TU196760
length 3015
RNA type TUCP
GC content 0.39
exon number 1
gene id G156206
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15954076 ~ 15957090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttatttaaaacctcATAGGCATACATACAGGAATTTCACAAgacaaaacagattaaaaaccaGTTCagttaaggaaagaaaaaacaaatacgaGTTACACATAACATTAAACTCACTGAACACAATTACTGCtgccttcaaaacaaatacattcaatattatAACACTGTGACATAGTGCTCAGTCTTTTTCATATGACAaagttgtgtttgtatttctttcccaTTAAAAGAAGTTTACAAAGTCCAGACACCATGTGAAAGTGCGGCAAGCTAGAACACAGGATTGTTAGAAAAGACATGCTGATCCAATCACtttttgcaaagtgattttcTTAAGGGCAGGCATATAGGATGCATACTTTCTAGAGCAGGTACTGCATAGGCAGATGCAGGCAGGCGTTTAGAAGCACTTTTCTGAATGACACATTCGGAAGCTCACATTACTCCAACaatcagaaaattaaaaaggtcaAAGCTGGTACCGCGGAACTGATTCAAATCCTGCCAAAAAAGTAAAGATGATCCTTCCATATACCACCAACACTGCAAGCACTTTAGTTCTGCCGGAGTGTACAGGGCTGAAAAATAAAGTCCAGATGGCAAAAAGTGCTGTAGTGGTTTTGCTGTGGGCTTTTCGATCTCACTTACAGATGCATTCCTCAGCAAGGGATCCTTACAAATGGATTAGCTTCTGCGATGCATATTATATAAAACAGGAGTCTGATCCCCCTTATGGAATTGGAGATATAATCGGCTTCCTTCATGTGCGCAGAGCATTCTGGGACAAAGCACAATATGCCGctataaaagacaaaaacaactggTGCTGCGCCGTGGAAAAGGCTGCACGAACCAAAAATGATGCCAAGCAGGGAAACTTACATAATTGTTCACATTGCCTGGTACTCACTTCTAGTGGGTCTATCCTTTATAACAGATGAAAAAGCCCTTTATAAATCAGGGCATTCCCCTCATACAAAACTTTTCTTAGAAACAAATCTCCCCATGATATGGGTTAATCAAAGTGCAGGTTAACAATAAACTCCAAAATAACTCCCATCGTCTTTTGAAACACACAGGCAAAAAAGGCAGAAAGTAGGGATTTTCATCAccaaatgtttaataatttcaTCTGAATTCCTCCACACCCCTAACCTGTGGGAGACACTTCTGGGGAAAGAACTTCGATAGATTAATGAACTGACTACTTTTTATTCTGCACCATAATTACAGTAGTAAATGTACCAAACTAATTTTATACTGACATTTACCCACAGAATCTAGAATAATGTGCTTATGACTTTATTCAAATTGTACTATACTTCAGTACCCTACCAACTTCTTTACTCATCTGATAAGTGTTACACATCAGCTAAGTTTCAAGAGACATAAGAACATCACAAGACATTAGTAGGACAGTTGCAGATCATGCAAACACATGACAAGGCGCCAGATTTGTAAAGGAAATGGGAAAAATCTAATTAGCATTAGtgctaaattataataattttccaGTATCCTGGGGAAATAACGAAATGCATTAAATTCCCTGCACAATGAAAAATCTGCATTGTGGTTGAACAGTGGGGGCACAAAAGTGAAATCTGGCCCTTGGTCTTTTCagccattacatttttataagcaCCCCAGATAAAATGGGTAAACGAACCAGTTTCTCTCCCTTTGGaagaatattaaaaatcaaaactcATCCAAAATAGAACAGATATCAGTTAATAAAGCATACATTTCATGTCTtatcatgcaaaatatacagtaatCACTTTAAAACCTGCCAGTTTAGCGAAACACTGACTTAGGGTCCAGCTACCAGGGAAAAATCTTGGAATTCAACGTGGGACATTACACATTGAGCTGCACCCTAAACTATAAAACTTAGCTAGTACTGTAATGTagtgtattttttactttttaagtgATCAGTGATCATTAGTGATCAGTCCACAATCATCATTTATATCTTTTTAGAACATCTACTATAGCCACTTCGTGCTTCTTGTTTTGATGATCTCCCTTCAAAGATAGACATTGGGATCTGTTGCCTTATTCAATATATTCGATATTTAAGGTATTTCACGCAACTGGCCTCTGCACAGGATCAGACTACACTTTATAATATTAGGAGCAGCATTTTAATGGGAGTAACTAGAACAATATTTGGTAAAATCTATgcgttttgttgttttttggggaaTTTTACGGAGGCTTTCCTTCAATGTTCAACAAACACTTTTTCCCTCTTCCTTTTAAGTCCTGTAGGCTTATGAAATACTGCAGCAACACCCACAGTTACACTGCAGAACAGGAGTCTTGTTTTAGtagcatgcattttacatacaCCCACTGATCTGCTCAGCCCTTCCAGATAAACACAGACTCGCTCTCAGTCAGTGGCCCTGCCCAACTGGAGGAATGTCATCatagcaaacacacacagagaaacacataaGTTATGATGAGGAGATAAACAATACAGGGCATAGCTGCACCTCTTGAAATCGCTCAGGAATCACAGAGATGGCCAGTGCGTTTTGATGCACTTCTGAGTGTCCCTCAggttgtaaaacaaatatttcaagtcAAATAAAAGGATGTTAGGATTGAGGAGTTTAATGTAAAGCAGCTAgaatatttgaaatgcaaaagtcTTAAGTCTCCATTACAGCGTGCATTCTGTTGCCAGGGGAGACAGTCACCGCTGCGTTGTAGTTTGTGGAAGTATCACAGGCATGCATGCAATTCCTGCGTAAGACTCGGGGAAGTGTAAATCCCGTTCCCActcatctgtctctgtgttaTACACCTGCACAATGCTGGTGACATTGTTTAAGTGCCAGTTGTACCCACCCAGGATGTAGATCTTATTGTCTAATAAACAGCACCCTGCCTCGGACTGACCGGCCCGCATGGGGCTCACAGTAGTCCACTGATCTGAGTCCGGGGCGTAATACTCTACGGCTAGAACATCAAAGCAGCGGTCGACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196754 lncRNA downstream 6549 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 338289 15615562 ~ 15615787 (-) True G156113
TU196629 lncRNA downstream 369310 15581857 ~ 15584766 (-) True G156104
TU196599 lncRNA downstream 517210 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 522146 15427308 ~ 15431930 (-) True G156049
TU196762 lncRNA upstream 37697 15994787 ~ 16000039 (-) True G156207
TU196784 lncRNA upstream 105643 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 109579 16066669 ~ 16071528 (-) True G156228
TU196920 lncRNA upstream 694450 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 712711 16669801 ~ 16680772 (-) False G156341
AMCG00006087 mRNA downstream 76652 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006086 mRNA downstream 135220 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006085 mRNA downstream 170075 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006075 mRNA downstream 177568 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006069 mRNA downstream 379389 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006116 mRNA upstream 44463 16001553 ~ 16012344 (-) True AMCG00006116
AMCG00006114 mRNA upstream 67385 16024475 ~ 16031177 (-) True AMCG00006114
AMCG00006115 mRNA upstream 116273 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006108 mRNA upstream 198216 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006109 mRNA upstream 233540 16190630 ~ 16208678 (-) True AMCG00006109
TU196604 other downstream 462434 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 517210 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1170070 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1271115 14679797 ~ 14682961 (-) True AMCG00006037
TU196220 other downstream 1444462 14509233 ~ 14509614 (-) True G155770
TU196870 other upstream 497279 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 548503 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 712711 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 990907 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 3318110 19275200 ~ 19293820 (-) True G156907

Expression Profile