RNA id: TU196762


Basic Information

Item Value
RNA id TU196762
length 907
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G156207
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15994787 ~ 16000039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGgtttcagtttttagttttttttctccttttattaaATTTCATTTACAAATAGTAATGCAAAGATACAAAGACAGAAGCCTTCacacaacaaaaatacttaaaaatgtacTATTTCAATTGAAGCTTTCACATCGGTTCTCAGTTTGCACACATCTATAGCCCacttttgattttcctttttttttttttttttttttttttttttttttgatggaACCGGGCAATATGAATTCAATTTGCAAGCTGTTAAGTCTTTACCTGATATGCGTTCAAGAAGTATTCAGCTTTTGCTTAACAAATGCTGTAAACAtgttatttagtattatttccTCAAACAAGAACGTTTAGCAGTGTCTAGCAGTGCCTGGATGGAAATGTTGCAGCAGATCAGTTTCAGTTCAGTGTGCATTAgttcattcacattcacaagatatgttctttttttttttcttttaccgtcatacacacaaaataaagagcATAAATACTTGTTTTAACTATGATTAATTCCtcttacatttaaaagcatttttaacaGTATATAGGTAAGCTTGGCAGATTTGGGTAGAGAGaatataaacagatttttttttttttagtttttttaaccgGGGGGGATGCTTAATCCGAAGTCTTTACCGACTTCTTTATGGAAATGTAAACAATTACAAAgtaacacattatatacacaaacatagaGGGGAGTgtgtaaacacaaaaatatataaagatacaCACACTcgcataaacacacatataaacgCATATAAAAGAGTCTGTAAGGTATTCAGACAGATCTCCcttaattattttcctattgAATATTTTCTCTGCTCTAATTCtcaaagaatatatttttttaagcaattttgtatattaaaagaTGTAGCACTGCCTTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196754 lncRNA downstream 47260 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 379000 15615562 ~ 15615787 (-) True G156113
TU196629 lncRNA downstream 410021 15581857 ~ 15584766 (-) True G156104
TU196599 lncRNA downstream 557921 15435124 ~ 15436866 (-) False G156088
TU196556 lncRNA downstream 562857 15427308 ~ 15431930 (-) True G156049
TU196784 lncRNA upstream 62694 16062733 ~ 16063072 (-) True G156225
TU196787 lncRNA upstream 66630 16066669 ~ 16071528 (-) True G156228
TU196920 lncRNA upstream 651501 16651540 ~ 16671387 (-) True G156341
TU196921 lncRNA upstream 669762 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA upstream 674759 16674798 ~ 16676047 (-) True G156344
AMCG00006087 mRNA downstream 117363 15840912 ~ 15877424 (-) True AMCG00006087
AMCG00006086 mRNA downstream 175931 15789347 ~ 15818856 (-) True AMCG00006086
AMCG00006085 mRNA downstream 210786 15778207 ~ 15784001 (-) True AMCG00006085
AMCG00006075 mRNA downstream 218279 15773678 ~ 15776508 (-) True AMCG00006075
AMCG00006069 mRNA downstream 420100 15565462 ~ 15574687 (-) True AMCG00006069
AMCG00006116 mRNA upstream 1514 16001553 ~ 16012344 (-) True AMCG00006116
AMCG00006114 mRNA upstream 24436 16024475 ~ 16031177 (-) True AMCG00006114
AMCG00006115 mRNA upstream 73324 16073363 ~ 16075726 (-) True AMCG00006115
AMCG00006108 mRNA upstream 155267 16155306 ~ 16180536 (-) True AMCG00006108
AMCG00006109 mRNA upstream 190591 16190630 ~ 16208678 (-) True AMCG00006109
TU196760 other downstream 37697 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 503145 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 557921 15433432 ~ 15436866 (-) True G156088
TU196327 other downstream 1210781 14782631 ~ 14784006 (-) False AMCG00006043
TU196273 other downstream 1311826 14679797 ~ 14682961 (-) True AMCG00006037
TU196870 other upstream 454330 16454369 ~ 16462159 (-) False AMCG00006083
TU196884 other upstream 505554 16505593 ~ 16518111 (-) False AMCG00006118
TU196919 other upstream 669762 16669801 ~ 16671387 (-) False G156341
TU196984 other upstream 947958 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 3275161 19275200 ~ 19293820 (-) True G156907

Expression Profile