RNA id: TU196921



Basic Information


Item Value
RNA id TU196921
length 462
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G156341
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16651540 ~ 16680772 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


NATTTAGGCTTGCAAAGCTTGGGACACTTGAGAAATCATGCATTATTCgtatttatttgaaaccatAATCAAGCTGCTTTTTTAAGATCTGTGTTTCTAATTTTAGACTGCCACTTCAATTTAATTGACTTGTCCTCTGGTCCTAGTTTTGTTGATGAGCTAGAAATAGTTGTTTTGTGGTGGTGAAGGGGCAAGACAAGTCAGGTTAAAATTGTCATTGTCAGTGCTGCCCCACAGTAACATTGTTCTGCTCTTTTCCAGCTGGGGCACCAGCTGGGGAGAAAACGGCTACCTTCGTCTGGCCAAGGACAAAGGCGACGAATGTGGCATTAGCCAGAATGGAGTCATCCCATTGGTGTGACCACATTCTGCGGCATAGAGTATAATGGGCTTTGCCTTTTCTCTTCCTTCAATGTCCATCAATCCATTATTCCagttaataaataatcacattGCACTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196787 lncRNA downstream 598273 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 606729 16062733 ~ 16063072 (-) True G156225
TU196762 lncRNA downstream 669762 15994787 ~ 16000039 (-) True G156207
TU196754 lncRNA downstream 722274 15947208 ~ 15947527 (-) True G156203
TU196640 lncRNA downstream 1054014 15615562 ~ 15615787 (-) True G156113
TU196965 lncRNA upstream 184326 16865098 ~ 16922863 (-) True G156378
TU197318 lncRNA upstream 1451557 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1457747 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1752834 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1851290 18532062 ~ 18532447 (-) True G156716
AMCG00006146 mRNA downstream 8885 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006117 mRNA downstream 31835 16627973 ~ 16637966 (-) True AMCG00006117
AMCG00006120 mRNA downstream 103644 16528222 ~ 16566157 (-) True AMCG00006120
AMCG00006118 mRNA downstream 148112 16505364 ~ 16521689 (-) True AMCG00006118
AMCG00006119 mRNA downstream 169223 16498652 ~ 16500578 (-) True AMCG00006119
AMCG00006144 mRNA upstream 13940 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006145 mRNA upstream 41438 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006129 mRNA upstream 155107 16835879 ~ 16844932 (-) True AMCG00006129
AMCG00006126 mRNA upstream 222821 16903593 ~ 16905803 (-) True AMCG00006126
AMCG00006128 mRNA upstream 242123 16922895 ~ 16941137 (-) True AMCG00006128
TU196884 other downstream 151690 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 207642 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 712711 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1178159 15489402 ~ 15491642 (-) False G156088
TU196602 other downstream 1232935 15433432 ~ 15436866 (-) True G156088
TU196984 other upstream 267225 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2594428 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2768159 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 4029027 20709799 ~ 20712216 (-) True G157059

Expression Profile