RNA id: TU196965


Basic Information

Item Value
RNA id TU196965
length 1165
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G156378
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16865098 ~ 16922863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaaaatgtatgttttgagtGCTTTGCAAAAAACAGGTTGATTTAGGCTAGGGATGGCAAGCCATGTAATGTAGGTACAGTAAGCCATAACTCCAAATGCAAGGGATGGTATTTAGTTAGATTTAAGGCAATGCTCAAGGCTCATTTTCttgttgaaatgaaaatgccATAGAAGTACTTGGagatcattttattaaaaaaaaaaaaaaaaaaaagtaaactcaTAAGCGTTATAAAAAGGTAATGGCATTAAAAAGgcataaatacagtaatacataGTCTTCATATAAGCTAATGAGGACACTGCGACAGTATAAAGTGTCTTTAAAAGCGGAATGATACATATAATTAAGACTGTTTTGAACTCGTGGAATGATGTGGAAGTCTCCTTAAGTAAATGTCACATACAAAAGAAGGCAATGACTAGAAGAAGCTTTtcatatatatagacatacatacatttatatatagactatacatatatatatacacacacattatatatatatatatatatatatatatatatacaaacacacacacacacacacatatacatacatacacacacacacacatgtataatcTAAAAGTTTGAATTAAGTTCATGCAGATAGTTTTGTGTATAATTCACAAGTGTGCACTCAACAGCTTTTGAGCAGCAGTTAAAAATAAGTTATGAGGAAAGGGAAGATGTCTGTGTGGGAAGTCAGATATGGATACAGCAATACGGTCATTTTACAGGCAAAGCTTaagagaagaaattaaaaacaaaaaaaacaaaaagatccTGAGCTCCCCTCCACGTTTTCCTGAATTGCATCCCAATGAACTTATTTTCAAGTTCTCTCATGCTCTCGGGTAAAGCGCCTGTGCTTTACCCGAGAGCATGAGAGAACTTGAAAATAATTGCCTGTCTGTAATCAGATTGCTTCCACACTGCAAATAACATGGTGTTATCTGCAGATCTTAAATCATCTTTGCTTGAGTTCTACATCAAAGCTCTGCATATTTACACCGGATCgcaataaatgcattaataccCAACAGGTTTGGCAATATAACTCTTGCCATTCAAAAAAACATTCTACTTGATCAAATCAGGGACAGTGGTTATACTATATACATTAaggtattcttttttttttttttttttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196921 lncRNA downstream 184326 16669801 ~ 16680772 (-) False G156341
TU196924 lncRNA downstream 189051 16674798 ~ 16676047 (-) True G156344
TU196920 lncRNA downstream 193711 16651540 ~ 16671387 (-) True G156341
TU196787 lncRNA downstream 793570 16066669 ~ 16071528 (-) True G156228
TU196784 lncRNA downstream 802026 16062733 ~ 16063072 (-) True G156225
TU197318 lncRNA upstream 1209466 18132329 ~ 18137505 (-) True G156668
TU197320 lncRNA upstream 1215656 18138519 ~ 18144775 (-) True G156670
TU197358 lncRNA upstream 1510743 18433606 ~ 18434245 (-) True G156696
TU197382 lncRNA upstream 1609199 18532062 ~ 18532447 (-) True G156716
TU197383 lncRNA upstream 1610320 18533183 ~ 18538243 (-) True G156717
AMCG00006129 mRNA downstream 20166 16835879 ~ 16844932 (-) True AMCG00006129
AMCG00006145 mRNA downstream 115703 16722210 ~ 16749395 (-) True AMCG00006145
AMCG00006144 mRNA downstream 161173 16694712 ~ 16703925 (-) True AMCG00006144
AMCG00006147 mRNA downstream 183630 16660952 ~ 16681468 (-) True AMCG00006147
AMCG00006146 mRNA downstream 204182 16648022 ~ 16660916 (-) True AMCG00006146
AMCG00006128 mRNA upstream 32 16922895 ~ 16941137 (-) True AMCG00006128
AMCG00006127 mRNA upstream 25134 16947997 ~ 16963650 (-) True AMCG00006127
AMCG00006132 mRNA upstream 57682 16980545 ~ 17008274 (-) True AMCG00006132
AMCG00006131 mRNA upstream 99406 17022269 ~ 17022594 (-) True AMCG00006131
AMCG00006133 mRNA upstream 100165 17023028 ~ 17028378 (-) True AMCG00006133
TU196919 other downstream 193711 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 346987 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 402939 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 908008 15954076 ~ 15957090 (-) True G156206
TU196604 other downstream 1373456 15489402 ~ 15491642 (-) False G156088
TU196984 other upstream 25134 16947997 ~ 16950117 (-) False AMCG00006127
TU197609 other upstream 2352337 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 2526068 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 3786936 20709799 ~ 20712216 (-) True G157059

Expression Profile