RNA id: TU197131


Basic Information

Item Value
RNA id TU197131
length 1488
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G156509
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17535631 ~ 17547361 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACCAGTCACTTTTTTTAGgtttaatagaaaaaacaaaaactattacaaaaagaaaattaaaacattacataatattTACAGCTGAAGCAGTATTATTGAACTTTACACAAGGTCATATAGGATAATTGTTTCCTTTATTACTTGTTATTGCATTTCTTAAGTAGAAGGAGTATACAGGTAATCCGTGAGAAGCTACCACTAGTGAGTTTATAACCAGGTTTCAACAATCCATGTAATTTATAGGACAGTGACAGAAGTTCTTAGTGATATTGTGAAAGGGTATGGCTTGGGGTGGTTCATCTGTGCCACCCGACTCTACTTTATCAGTGCTTTACAAATATCTGCTGAGAACCAAGGAATCCAGGAGAGTCTGGGTTCATTTTTACTAATGATCAAAACAACTATTTAGATACAGTCTATAACGAACATTTGCGGATATCTTTTAGATTTTTGGCATGGATACATCTGTTCCCTGGTCTTATGTAAATGCCAATACAAATTCCTTTTTCACCCCTTGACCTCGAGGTCTTAAGGCTACTGCACGTGCCAATGCATTCCTCTTACCCATCAGTTACCATGTGTGCCAACCAATCCCATGTCCCTTCAGGGAAGGGCTGTGTTCTGTGGTGCCACTGGACATCGATTTATAGATATGAATGCATGTTTCACAACCTACAACAATCCCTATTGCTACTGAGAGGCAATCGTATTTACACAAAGTAAATATTATTCATTCAAATGTGTGCACCCAGAtcacaatatttttcaaaagtgACAGGGAGTAAAACTCACAGGGTAACCAGTGGTGTAAGACAAATTTTTTTTGCGGGTTTTCTCAAGCCAAGTGGGCATGTGCACATTGattacaacaattattattgCCAGTTTAGAAATGtgtgaagatgttaaaattaGAAAATCAGGATTTCCCTTTTTCTACTGAAAGTACACCGACTAACTTCAGCCCCTTTCAGTCTAGCATCCTAAAAGCCAGGTTGGCCCTAGTCAAGTCAAAACATGGTCTCGAGGATCAGACCCGGGAGAATCCACTTTCACAAGACAATCAGAACCCGGTTTGCTCAAAAGTGGGTCATAACCTGGGTTGATGTGCTTGTGTGCAAGGGACTTCAGTCACATGATTTCCATCCTGCATTAGTCTCAGACAGGATCAGAACACTTTCACTTTAGTTCTTAGCTGTTCCGTTTGGGTTTCCATATAGTTCACTGAACACATGGAGGACTATTCCTCCACCAGGCCTCTAATCACACCCTTTCTTTCTAAATCAGCTGTGAATTGTCTGGAACAGTGGGCTCCATCATTTTTAGGAACTGTAACGTAGCATTGATCACCATGTGCAGCACAATAAAGAATGGGAGTGGCAGTATCtctctcaaaaaacaaaaacatgaaattaaatgatttcAGATAAACCAGACTAGTCTCAATGATAGGGCCCTGGCTCTTATGGCAGgggaaaaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197127 lncRNA upstream 10881 17523234 ~ 17524750 (+) True G156506
TU197041 lncRNA upstream 193475 17332536 ~ 17342156 (+) True G156440
TU197030 lncRNA upstream 363851 17159577 ~ 17171780 (+) True G156430
TU196904 lncRNA upstream 890782 16644447 ~ 16644849 (+) True G156329
TU196901 lncRNA upstream 907918 16625558 ~ 16627713 (+) True G156326
TU197144 lncRNA downstream 20198 17567559 ~ 17571532 (+) True G156521
TU197184 lncRNA downstream 114829 17662190 ~ 17700067 (+) False AMCG00006188
TU197197 lncRNA downstream 160309 17707670 ~ 17708721 (+) True G156564
TU197195 lncRNA downstream 213387 17760748 ~ 17764228 (+) True AMCG00006190
TU197200 lncRNA downstream 227304 17774665 ~ 17777870 (+) True G156567
AMCG00006136 mRNA upstream 16798 17511902 ~ 17518833 (+) True AMCG00006136
AMCG00006149 mRNA upstream 407998 17123248 ~ 17127633 (+) True AMCG00006149
AMCG00006150 mRNA upstream 414126 17104337 ~ 17121505 (+) True AMCG00006150
AMCG00006151 mRNA upstream 433770 17095682 ~ 17101861 (+) True AMCG00006151
AMCG00006130 mRNA upstream 459367 17070040 ~ 17076264 (+) True AMCG00006130
AMCG00006188 mRNA downstream 152618 17699979 ~ 17735084 (+) True AMCG00006188
AMCG00006190 mRNA downstream 198772 17746133 ~ 17762467 (+) False AMCG00006190
AMCG00006191 mRNA downstream 241622 17788983 ~ 17811459 (+) True AMCG00006191
AMCG00006189 mRNA downstream 304678 17852039 ~ 17877059 (+) True AMCG00006189
AMCG00006187 mRNA downstream 332622 17879983 ~ 17905624 (+) True AMCG00006187
TU197026 other upstream 408077 17123205 ~ 17127554 (+) False AMCG00006149
TU196902 other upstream 906449 16627793 ~ 16629182 (+) True G156327
TU196796 other upstream 1391008 16140544 ~ 16144623 (+) False AMCG00006089
TU196781 other upstream 1475801 16054035 ~ 16059830 (+) False AMCG00006113
TU196746 other upstream 1562625 15964433 ~ 15973006 (+) False AMCG00006107
TU197282 other downstream 426380 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 642863 18190224 ~ 18356589 (+) True AMCG00006138
TU197362 other downstream 930767 18478128 ~ 18480087 (+) True AMCG00006174

Expression Profile