RNA id: TU197464


Basic Information

Item Value
RNA id TU197464
length 859
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G156791
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18741351 ~ 18742209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCATTGgcatggttttttttttggtcaagaTACAAAAACCTCTTGTCTGTTCTGTGTAGGCCTAGTATTGTGTTTTGGAAAATCCTCAAGACAAATGGCTTCCTTCAGAGgtctttattctgtttattagtTCTGACGCTATAGAATGATATGCAGAagactgctctgtgtgtgttgcctgaGGAACAGATGTGGTCACATAGTACCGTTTGTCAGAATGTTACTTATTTGATTCTTTTactgaaaaagtattttttgtgtcaTAAGATATTTGAGTGTTTTTACtcaaaataaaaggaagcatTGTAAGTGTCCATACTCTGTGAGGTATGGTTACAAAGCCCAAGGCACAAGCTTGTCCCTCTTTTCAGTGTTTCACAGGATTATTTATCCTAGACCACTAAGAAAACATCTTCAGAAACGAGAATGGGGAAGcatttcagttaaaatatattatatataaatgtaaaataaacaaaagtagaAAATCtactttgtgtatttaaaacaaatggttacataaaatactttttaaacatctagttcagattttttttttttcttccaataaaccttttatttattttggttttgttttttttaaatctcttttcCATGATCAAGGCTGTGTTTCCAGTTTACGGGATTGTCGACATGTCTTTTTGTCTGTATCGGGGGGCTGACGGGGACTCCTGCTGCACAGTAGGGGTAATGCAAAAAAACAGCTGCACTGTGACAGAATCTGAAGTGTTGGCGGTGCCACCATTGACTGAATGGTGAAAGTGAAATTTAATTGGGATTTTAACTTACAATGCCACTGTGTGGCCATATAATGCAAGTTGTGACAAGGagttcaa

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197383 lncRNA downstream 203108 18533183 ~ 18538243 (-) True G156717
TU197382 lncRNA downstream 208904 18532062 ~ 18532447 (-) True G156716
TU197358 lncRNA downstream 307106 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 596576 18138519 ~ 18144775 (-) True G156670
TU197318 lncRNA downstream 603846 18132329 ~ 18137505 (-) True G156668
TU197489 lncRNA upstream 98592 18840801 ~ 18843916 (-) True G156812
TU197529 lncRNA upstream 213514 18955723 ~ 18956035 (-) True G156846
TU197530 lncRNA upstream 213894 18956103 ~ 18956315 (-) True G156847
TU197547 lncRNA upstream 289921 19032130 ~ 19032334 (-) True G156862
TU197633 lncRNA upstream 647868 19390077 ~ 19390399 (-) True G156929
AMCG00006159 mRNA downstream 72970 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006140 mRNA downstream 297269 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006165 mRNA downstream 709182 18013807 ~ 18032169 (-) True AMCG00006165
AMCG00006163 mRNA downstream 743280 17984542 ~ 17998071 (-) True AMCG00006163
AMCG00006192 mRNA downstream 806966 17906040 ~ 17934385 (-) True AMCG00006192
AMCG00006158 mRNA upstream 7625 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006160 mRNA upstream 32716 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006171 mRNA upstream 72208 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006172 mRNA upstream 91121 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006161 mRNA upstream 111484 18853693 ~ 18887143 (-) True AMCG00006161
TU196984 other downstream 1791234 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2069964 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2223240 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2279192 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2784261 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 532991 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 706722 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1967590 20709799 ~ 20712216 (-) True G157059

Expression Profile