RNA id: TU197489


Basic Information

Item Value
RNA id TU197489
length 3116
lncRNA type intronic
GC content 0.35
exon number 1
gene id G156812
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18840801 ~ 18843916 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaatttataacttttttgaaatatgtttttctggactttttttgttgttaatctgtctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaatgtacaaaatcagcaggggatcaaatacttttttccctcactgtacaataaTGTGGGAAACAGTGGTGCTtaaatttattatataaatgaaaaggcacaaagaaaatgaatcaaCTATCTtgatgtaaaaaagaaaaaaaggtgaGACTGCAGATCAAAGTATAGGCCACTACAAGGTGGGAGAATTCCCTACCATGCCTAGTTTTACAATGTAATCCTTGTTTACTGTGCACAGATCTGTCAGaggaacttttatttttattttctgaatttgtttttataggaaatctataaaacaaaaatcctatAGACTCGGacagctgtttttctgtttctttgtcATATTTTTTCTACTTGTATatgaaattttattttttggggaaaagctggttttgaaaatgattaCAAATATGCAGTCTCTATTCTCATACTACTGACATAGCACACCACCAGACATTATTTTGAGAACTCTTCCCAGCGGAACTCCAATTTATTATGCATAGGTGATAGGTGTCTTGTGgatgttttattaatagttattttaattatcaaaatGGATGTGTAGTTCACCCATAGGGTGACGAGTTTCTAGCATTGTGGCCTTGAAGtacaatgttcttttttttattattttttaaatttaaattaagtattgtattttcaatatgCAACTTATTAAGTCAGTTACATAGTACAGGGCTCAGTAGAGAGGTCTAACAAAACACAAGATATAGCATAACTTGTAAGTGCTCAGTTAGAgaagtaaaaatattttctgtggtCTCTCACACTAAGAGGCCaagattacattataatatgtGTGAAAAGatagtatgtattattatttgtatttattggcagatgcccttatccagggcgacttacaacataattgcaaaaatacGGAGAAGTACAAAGTATGTAGTacgagagaggaaaaaaaaaaatctgcagtgaTATCACAGTGCTCATGTTAGTTTTTCAGAGGTTGCAAAGATATGATGTGCAAGTGTACAGATGCATTGCACAGTGGGTCTAGTATTGTGGAGGACAGAGCTGAGTGTACCAGGTGGTGTAAGGGAGATGAGAACAGACTGATCATTTTGGGGTTTCTTGtttgatttgtgattttttttttcaggctaGAGTGAAAAAAGTCTACTGAAAAGATTCCTTGGTACATGAGAGGAAATGAGAGGAAATGGAGATTAGGCGGTTAGGTCAGTGGTGCACAGACTCCTGAAAGGAAATACAATTGTCTGTAACTGTTGCTAATTGTGTATAATTGTGAAATTGAACAATGATAGGCAAGGTTTGAATTGGGTCAAAGAGCAAGGAAACTCATGGCAGTGAATGACAAAGCTCCGTGCTTGTTTTGTGTCCACGATGTATTTAATagattgtgatgcatttatagCTTGATTTGTAAACTTGATTGATTGAGTGTGAGGGGGAGGAATACAAATCTTTTTtgaattttattattaactAGGACACCAAAAATGCTCTTGCCTTTGCTGTATACCTTTCACTTTCATGTGAGTAAAAGATGGTGAAATACCAACCATAGTTTAATGAATGTCCTTTTGTAAACTCAATATCCAAGAGAGGAAAACATTACCAAATGTGGTGTGTCTAGGCTTATTTTTTGGGGCTATTTTGCTATTCTGTTAATTAAATAGCCCATCTCATTATCTTTCTTATTAGTCATTAATCATTAAGTTCTCCCTTATCACACATGTTAGAGGGTTTCCTTTTTGGTAGGTTTTATATTTGTCTGtggactttttcttttgtaaaggTCAgatatgtaacttttttcattcAGTAGGTAAATTGCAGCTGGAAGAAGTTAGTGGGTGTAAAACCACTAAACCAATGCTTTTTCATAATTAGAGGCACTGcaaataaatgtctttaataCCGAGCAGGTATTTATTCAATGGCACATTGTAGTACTGGCAGCGACCAGGACAGCACCCTATATAAACCTTCATGCAACCCCACCAGAGTGTCTCAGTATCCAGTGGAGAAAGGACAAGGAGGtcgaaggagagaaaaacaaactaataccCTGTCTCAGGGTATTTGGCAACGCTTTGGCAACGACCTCTGACCATGACTTTAACCCTGAGTGATCCTTACTCCGGTAAAGTGAACTTTCAGCTTATGAACTATGACTATTCTTTTGTATTTGCGATCTGgacctgtttgttttgtgttttgtagttttcattaGCAGTTCATGGTAAGAGGGGGATCTGTTTACACTGTGTAGGTGGGCTCAAAAGGggttatggttttgttttatttgtttacaggGTTCTGTCTAGGGTTTTGTGGCAGGTCCCGATCTAATACGATAAGTAACTGCCCTTACCTGTGctttatctatatctatctatctatctatctatctatatggtAATATGAAAATTgttcaggggtctgaatacttttgcaaggcactgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgcgtATGTATATGAAAATTTGATTTAGactatttcttgtattttaataaaagtttcattttattgaataacaacaAGTTTCAACACTACTGTATCTTCGTCATGAAGGGAGTTTTGGGGTCCTGGGGTGATACTGAATAATCCTAGAGGTTTCACTTGATCTGATGTTATCCCACTTCATTGTGTGAAGTAGAACAGCTAGCAAGAGCAAATGTATTATGCGGAGGGGACCAGGCGATCCATTGTGGTCAGGGTATTGgattatcttttgaaaatgaaaaacaaaaatgcttttacaaaatactttgaaaaaaGGTGCCTGCCATACACAGAGCATCATAATTGAACAGTACAGCAATGTCATTAGTGAAGtaaaaagtattatttcttcttactaaatatatattcttccaCGTAACATGATTTAAAGTACTATCTTACTGGCTAATCATATATATtgaagattgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197464 lncRNA downstream 98592 18741351 ~ 18742209 (-) True G156791
TU197383 lncRNA downstream 302558 18533183 ~ 18538243 (-) True G156717
TU197382 lncRNA downstream 308354 18532062 ~ 18532447 (-) True G156716
TU197358 lncRNA downstream 406556 18433606 ~ 18434245 (-) True G156696
TU197320 lncRNA downstream 696026 18138519 ~ 18144775 (-) True G156670
TU197529 lncRNA upstream 111807 18955723 ~ 18956035 (-) True G156846
TU197530 lncRNA upstream 112187 18956103 ~ 18956315 (-) True G156847
TU197547 lncRNA upstream 188214 19032130 ~ 19032334 (-) True G156862
TU197633 lncRNA upstream 546161 19390077 ~ 19390399 (-) True G156929
TU197636 lncRNA upstream 555518 19399434 ~ 19399637 (-) True G156932
AMCG00006171 mRNA downstream 19395 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006160 mRNA downstream 60408 18774925 ~ 18780393 (-) True AMCG00006160
AMCG00006158 mRNA downstream 78153 18749834 ~ 18762648 (-) True AMCG00006158
AMCG00006159 mRNA downstream 172420 18637497 ~ 18668381 (-) True AMCG00006159
AMCG00006140 mRNA downstream 396719 18441462 ~ 18444082 (-) True AMCG00006140
AMCG00006161 mRNA upstream 9777 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006166 mRNA upstream 237123 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006184 mRNA upstream 395449 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006199 mRNA upstream 458744 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006201 mRNA upstream 610720 19454636 ~ 19463205 (-) False AMCG00006201
TU196984 other downstream 1890684 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2169414 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2322690 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2378642 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 2883711 15954076 ~ 15957090 (-) True G156206
TU197609 other upstream 431284 19275200 ~ 19293820 (-) True G156907
TU197648 other upstream 605015 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1865883 20709799 ~ 20712216 (-) True G157059

Expression Profile