RNA id: TU197609


Basic Information

Item Value
RNA id TU197609
length 1938
RNA type TUCP
GC content 0.38
exon number 4
gene id G156907
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19275200 ~ 19293820 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACAACAGAAACATCTGGCAAGCTGCTCTGTTGCTATTACTATCCAGAACACGACAGTTTTGCTTTCTGTATATCCGAAAGCACTCACAGCTTAACACGCACACCCCTTTCCTGTCCTGTTGCTTCATAATTCAAGGGGAAGTACTTTTAAGCAAAACATTCTGTTCTCTCTCATATAGACAGGACTGCAGAGCTATTTGGCATTTTATTCGCTGTGTGGACAACACAGTTGTCTTCTATATTCCCTTCAGGATGACTAActcaaaatgtttacaggtctttTGTACTGGTTCATAGTCTCTATTGGTGTCATCATACACCTGGCCACCTCCAGCACCATGCAACGGGTGAAGCAGTGTAAGGCAGATCTGGAGGCTCATGAGCAgtggaaggagaaggagaaataCTATGAGAAACAATTGCAGGAAAGCAAGGAGAAACAGAGGCAGCTACAGGAGGCTATTGCCAAAGACGATCAGGAGAACAAAGCTTCACTATTCAAGTATCAGCAAGAAGGGatcaGATCATTTTACTGCAGCTCAACCTATCCATGAAATCACAGGAGCTGGAGTCACTCGTTGAGCAGCACAGAGCAAATGTGAGCAGCCTCGAGGCTACTTAAAACAAGCTAAACATGTGTGAGAAGATCAAAGTGAAGCAACAGGCAAAGATGCAAGAGTATATGAAAGAAATCAAAGAGCTCAACATTCTGATTTCTCCAGCACACAGACCTGAGCCCTATCACTTCATCGTTGCCTGGTGCATTTCCATCTTGCTGATGCCTCAACTTCAATACTGGAAAGTGTGATGCAGGGAGCTTGGATTGCAAGACAACCACGCGGTGCTCTGCAGTGTGATCCTATTCTCCATGCGGACCATGGCTGAAATAAGACACAATAGcttataaattcatattttgagattatattattttgtccaGTATATCTAGTATATCCCACTATCAAGAACTGCAGGGTCGCCTGATATAACAGCTTTGTATTGTAGTCCTTGGGATTAACAGTCCAATAGGTTTTGAAACGGTCTTTAGATTACCAGCAATTTAAGAATTAGAAACTGTTGTTAGGTTGGTTCAATAATGTCAATAATAACCTGATCCAGGTAGTTAAATACTCACACAAAACGAAACTGCACCATCTACTGTAATATAGGCTACCAAAAGCTATACAGCTATTTTCTAAACTTGCATTAATTTAGAtgattaagaaaatgtatgtgcCACTCCTATAGGAAGTCAAGATAGGAAGCAAACTAAAGATTATTTGAATGGCAATATAATCAATTTAAGTCCTTTTCAATGGTGGAGATACAGCAATGCATAACACTGGTTGAGCTATGTCACTTTAAAAATCTCATATatctatttaaatgtactgtaagtACACCAACTAATCTTTAATTACATAACTAATTTCTGTAGTATGTTGTATTGCCCACAATACATCCACAGCGTTACAAACCAAATTGATACATCAATAGCAAATTAGTTGATTCTTCCAATCTTAATATGGTGCTGAGGAGAAAGctactgtatacatttaaaagtaaagtatgagcttgttgaaaatgtttttacagaacTGCTTGGAAAATGgaaccaaaaatgtattattctgctttgaaatgtattacaagTAGGATACTTATTTGTTCTATTCAATGATTTTCATTGCATGTATTTAATTccatttgcaatttattttctatagcaTCTCACCATGGTGCACATGCGGTCCAAGAGCTTCACAGAGTCCAAAGACATTGTGACAATGAGCTGACTGCACAAGAGTAATACAACTAAAACTACAGTAACATGCTGTACTAAAGATAATATAATCAAATGCAGTGATTTACTTGCTTTTTTTAAGGGTGTAGTATTTATTCTAACATATTTACTTTGGCAAATGGGGGGAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197547 lncRNA downstream 242866 19032130 ~ 19032334 (-) True G156862
TU197530 lncRNA downstream 318885 18956103 ~ 18956315 (-) True G156847
TU197529 lncRNA downstream 319165 18955723 ~ 18956035 (-) True G156846
TU197489 lncRNA downstream 431284 18840801 ~ 18843916 (-) True G156812
TU197464 lncRNA downstream 532991 18741351 ~ 18742209 (-) True G156791
TU197633 lncRNA upstream 96257 19390077 ~ 19390399 (-) True G156929
TU197636 lncRNA upstream 105614 19399434 ~ 19399637 (-) True G156932
TU197640 lncRNA upstream 108362 19402182 ~ 19413340 (-) True G156935
TU197650 lncRNA upstream 155213 19449033 ~ 19451861 (-) False AMCG00006201
TU197651 lncRNA upstream 161569 19455389 ~ 19460205 (-) True AMCG00006201
AMCG00006184 mRNA downstream 6139 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 158613 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 388057 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 423121 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006171 mRNA downstream 453794 18814417 ~ 18821406 (-) True AMCG00006171
AMCG00006199 mRNA upstream 8840 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006201 mRNA upstream 160816 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006195 mRNA upstream 531005 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 578072 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 586230 19880050 ~ 19881917 (-) True AMCG00006197
TU196984 other downstream 2325083 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2603813 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2757089 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2813041 16454369 ~ 16462159 (-) False AMCG00006083
TU196760 other downstream 3318110 15954076 ~ 15957090 (-) True G156206
TU197648 other upstream 155111 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1415979 20709799 ~ 20712216 (-) True G157059

Expression Profile