RNA id: TU197640


Basic Information

Item Value
RNA id TU197640
length 426
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G156935
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19402182 ~ 19413340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACaagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattttttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagtagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtggtagccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197636 lncRNA downstream 2545 19399434 ~ 19399637 (-) True G156932
TU197633 lncRNA downstream 11783 19390077 ~ 19390399 (-) True G156929
TU197547 lncRNA downstream 369848 19032130 ~ 19032334 (-) True G156862
TU197530 lncRNA downstream 445867 18956103 ~ 18956315 (-) True G156847
TU197529 lncRNA downstream 446147 18955723 ~ 18956035 (-) True G156846
TU197650 lncRNA upstream 35693 19449033 ~ 19451861 (-) False AMCG00006201
TU197651 lncRNA upstream 42049 19455389 ~ 19460205 (-) True AMCG00006201
TU197658 lncRNA upstream 66128 19479468 ~ 19480437 (-) True G156946
TU197659 lncRNA upstream 72210 19485550 ~ 19489841 (-) True G156947
TU197685 lncRNA upstream 303833 19717173 ~ 19717679 (-) True G156971
AMCG00006199 mRNA downstream 96042 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006184 mRNA downstream 133121 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 285595 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 515039 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006172 mRNA downstream 550103 18833330 ~ 18852079 (-) True AMCG00006172
AMCG00006201 mRNA upstream 41296 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006195 mRNA upstream 411485 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 458552 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 466710 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 482085 19895425 ~ 19922471 (-) True AMCG00006194
TU197609 other downstream 108362 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2452065 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2730795 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2884071 16505593 ~ 16518111 (-) False AMCG00006118
TU196870 other downstream 2940023 16454369 ~ 16462159 (-) False AMCG00006083
TU197648 other upstream 35591 19448931 ~ 19451861 (-) False AMCG00006201
TU197805 other upstream 1296459 20709799 ~ 20712216 (-) True G157059

Expression Profile