RNA id: TU197658


Basic Information

Item Value
RNA id TU197658
length 490
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G156946
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19479468 ~ 19480437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAGCAGTATTTTGGCATATATTTCATGCACGGTGCGGGTTTCTCTCTTCTTCTGGATCTCTGCATCATACCAGTAGCCCCTTTCCTTGGGTTCATCAGGGTTATAGTTCACCATGACCACCATGCCCACGTCTAGCTGATGCCACTGGTACACAGTCCTCGCTCGAGGGCGCACATCTTTCCCAGACAGCTTCACCACTCCATTCTCTGGATAATCCTCATATTTGACGTGATACACAATCTCCTCCTCGCTTTGACTGATCTCGGGATCAGTCATACTCTCTGCAGAGTCACTGGGGCTTTTAGTTTCTTTAGTGACGTTGACAATTTGCGCTTCAAACCATGCTCCCATGTTCAAATCACGGGCATCAACAAACTCATTGATCTGAAAAAGAAATTGCAAAAAGACAAATTTTCCTGTGTATATAATCCATTGCAATTCATTGTTTAgcctcttaattacttaataaaaCTTTAAAGCAGTAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197651 lncRNA downstream 19263 19455389 ~ 19460205 (-) True AMCG00006201
TU197650 lncRNA downstream 27607 19449033 ~ 19451861 (-) False AMCG00006201
TU197640 lncRNA downstream 66128 19402182 ~ 19413340 (-) True G156935
TU197636 lncRNA downstream 79831 19399434 ~ 19399637 (-) True G156932
TU197633 lncRNA downstream 89069 19390077 ~ 19390399 (-) True G156929
TU197659 lncRNA upstream 5113 19485550 ~ 19489841 (-) True G156947
TU197685 lncRNA upstream 236736 19717173 ~ 19717679 (-) True G156971
TU197693 lncRNA upstream 324511 19804948 ~ 19805171 (-) True G156979
TU197745 lncRNA upstream 748149 20228586 ~ 20229103 (-) True G157011
TU197754 lncRNA upstream 874026 20354463 ~ 20354668 (-) True G157020
AMCG00006201 mRNA downstream 16263 19454636 ~ 19463205 (-) False AMCG00006201
AMCG00006199 mRNA downstream 173328 19302660 ~ 19306140 (-) True AMCG00006199
AMCG00006184 mRNA downstream 210407 19239365 ~ 19269061 (-) True AMCG00006184
AMCG00006166 mRNA downstream 362881 19081039 ~ 19116587 (-) True AMCG00006166
AMCG00006161 mRNA downstream 592325 18853693 ~ 18887143 (-) True AMCG00006161
AMCG00006195 mRNA upstream 344388 19824825 ~ 19859369 (-) True AMCG00006195
AMCG00006196 mRNA upstream 391455 19871892 ~ 19874931 (-) True AMCG00006196
AMCG00006197 mRNA upstream 399613 19880050 ~ 19881917 (-) True AMCG00006197
AMCG00006194 mRNA upstream 414988 19895425 ~ 19922471 (-) True AMCG00006194
AMCG00006193 mRNA upstream 504242 19984679 ~ 19988411 (-) True AMCG00006193
TU197648 other downstream 27607 19448931 ~ 19451861 (-) False AMCG00006201
TU197609 other downstream 185648 19275200 ~ 19293820 (-) True G156907
TU196984 other downstream 2529351 16947997 ~ 16950117 (-) False AMCG00006127
TU196919 other downstream 2808081 16669801 ~ 16671387 (-) False G156341
TU196884 other downstream 2961357 16505593 ~ 16518111 (-) False AMCG00006118
TU197805 other upstream 1229362 20709799 ~ 20712216 (-) True G157059

Expression Profile